Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOO_RS10605 Genome accession   NZ_CP170406
Coordinates   2139577..2139972 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21635     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2134577..2144972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOO_RS10580 thiE 2135176..2135817 (-) 642 WP_054190444.1 thiamine phosphate synthase -
  ACFIOO_RS10585 thiM 2135819..2136610 (-) 792 WP_054190445.1 hydroxyethylthiazole kinase -
  ACFIOO_RS10590 thiD 2136594..2137424 (-) 831 WP_054190446.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOO_RS10595 tenA 2137417..2138106 (-) 690 WP_054190447.1 thiaminase II -
  ACFIOO_RS10600 sceD 2138493..2139188 (-) 696 WP_054190448.1 lytic transglycosylase SceD -
  ACFIOO_RS10605 ssb 2139577..2139972 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOO_RS10610 - 2140166..2140606 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOO_RS10615 fabZ 2140664..2141104 (-) 441 WP_054190450.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOO_RS10620 murA 2141138..2142403 (-) 1266 WP_054190451.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOO_RS10625 - 2142514..2142747 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOO_RS10630 - 2143271..2143675 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1056868 ACFIOO_RS10605 WP_000932694.1 2139577..2139972(-) (ssb) [Staphylococcus aureus strain t21635]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1056868 ACFIOO_RS10605 WP_000932694.1 2139577..2139972(-) (ssb) [Staphylococcus aureus strain t21635]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTCGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment