Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOO_RS04180 Genome accession   NZ_CP170406
Coordinates   888234..889220 (+) Length   328 a.a.
NCBI ID   WP_054190362.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21635     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 883234..894220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOO_RS04155 opp4B 883401..884363 (+) 963 WP_054190365.1 oligopeptide ABC transporter permease -
  ACFIOO_RS04160 opp4C 884375..885256 (+) 882 WP_410540953.1 oligopeptide ABC transporter permease -
  ACFIOO_RS04165 trpS 885344..886333 (-) 990 WP_054190364.1 tryptophan--tRNA ligase -
  ACFIOO_RS04170 spxA 886628..887023 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOO_RS04175 mecA 887394..888113 (+) 720 WP_054190363.1 adaptor protein MecA -
  ACFIOO_RS04180 coiA 888234..889220 (+) 987 WP_054190362.1 competence protein CoiA Machinery gene
  ACFIOO_RS04185 pepF 889268..891076 (+) 1809 WP_070016683.1 oligoendopeptidase F -
  ACFIOO_RS04190 yjbH 891536..892342 (-) 807 WP_054190361.1 protease adaptor protein YjbH -
  ACFIOO_RS04195 - 892365..892730 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  ACFIOO_RS04200 - 892834..893427 (-) 594 WP_054190360.1 CYTH domain-containing protein -
  ACFIOO_RS04205 - 893613..893960 (+) 348 WP_054190359.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38854.26 Da        Isoelectric Point: 9.3244

>NTDB_id=1056841 ACFIOO_RS04180 WP_054190362.1 888234..889220(+) (coiA) [Staphylococcus aureus strain t21635]
MLVALNEEKERVLATTALRKTQYFCPMCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
DIEPFLKEIKQIPDILINNKYVIELQYSPIPYKEILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFDLENKQIYKFHQLQSLGGNKYFAYKTKDCISELFNETPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLNDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1056841 ACFIOO_RS04180 WP_054190362.1 888234..889220(+) (coiA) [Staphylococcus aureus strain t21635]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACGCAATATTTTTGTCCGAT
GTGTGGGAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GATATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAAGAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGGTATAAAGTGAGTTGGTTATTAA
ATGATGTTGATTACTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAACCCAATCACTCGAAAACTT
CATACGTTTGATTTAGAAAATAAGCAAATATATAAATTTCATCAATTACAAAGTTTAGGCGGCAATAAGTATTTTGCGTA
TAAGACGAAAGACTGTATTAGTGAGTTGTTTAATGAGACGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATTAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAACAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

92.378

100

0.924
  coiA Staphylococcus aureus N315

92.378

100

0.924

Multiple sequence alignment