Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOO_RS02300 Genome accession   NZ_CP170406
Coordinates   500411..500980 (+) Length   189 a.a.
NCBI ID   WP_054190481.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21635     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 495411..505980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOO_RS02275 cysE 496624..497271 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACFIOO_RS02280 cysS 497255..498655 (+) 1401 WP_054190482.1 cysteine--tRNA ligase -
  ACFIOO_RS02285 - 498648..499052 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOO_RS02290 rlmB 499060..499806 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOO_RS02295 - 499806..500330 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOO_RS02300 sigH 500411..500980 (+) 570 WP_054190481.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOO_RS02305 rpmG 501095..501238 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOO_RS02310 secE 501294..501476 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOO_RS02315 nusG 501489..502037 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOO_RS02320 rplK 502218..502640 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOO_RS02325 rplA 502848..503540 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOO_RS02330 rplJ 503812..504312 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOO_RS02335 rplL 504354..504722 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOO_RS02340 - 504897..505505 (+) 609 WP_054190480.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23085.90 Da        Isoelectric Point: 9.6015

>NTDB_id=1056836 ACFIOO_RS02300 WP_054190481.1 500411..500980(+) (sigH) [Staphylococcus aureus strain t21635]
MEYDLTTQDSTTKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1056836 ACFIOO_RS02300 WP_054190481.1 500411..500980(+) (sigH) [Staphylococcus aureus strain t21635]
TTGGAATATGATTTGACAACTCAAGACAGTACAACCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCAAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968

Multiple sequence alignment