Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOQ_RS03190 Genome accession   NZ_CP170404
Coordinates   645054..645449 (+) Length   131 a.a.
NCBI ID   WP_000932585.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t7960     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 640054..650449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOQ_RS03160 - 640261..641580 (-) 1320 WP_001807150.1 ISL3-like element IS1181 family transposase -
  ACFIOQ_RS03165 - 642055..642148 (+) 94 Protein_623 hypothetical protein -
  ACFIOQ_RS03170 - 642280..642513 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOQ_RS03175 murA 642624..643889 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOQ_RS03180 fabZ 643923..644363 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOQ_RS03185 - 644420..644860 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOQ_RS03190 ssb 645054..645449 (+) 396 WP_000932585.1 single-stranded DNA-binding protein Machinery gene
  ACFIOQ_RS03195 sceD 645838..646533 (+) 696 WP_000751999.1 lytic transglycosylase SceD -
  ACFIOQ_RS03200 tenA 646920..647609 (+) 690 WP_000396067.1 thiaminase II -
  ACFIOQ_RS03205 thiD 647602..648432 (+) 831 WP_000594952.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOQ_RS03210 thiM 648416..649207 (+) 792 WP_001108488.1 hydroxyethylthiazole kinase -
  ACFIOQ_RS03215 thiE 649209..649850 (+) 642 WP_000483160.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14984.06 Da        Isoelectric Point: 6.2281

>NTDB_id=1056796 ACFIOQ_RS03190 WP_000932585.1 645054..645449(+) (ssb) [Staphylococcus aureus strain t7960]
MLNKIIIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGGIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1056796 ACFIOQ_RS03190 WP_000932585.1 645054..645449(+) (ssb) [Staphylococcus aureus strain t7960]
ATGCTAAATAAAATCATAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGGAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

98.473

100

0.985
  ssb Staphylococcus aureus MW2

97.71

100

0.977

Multiple sequence alignment