Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOB_RS10535 Genome accession   NZ_CP170401
Coordinates   2110981..2111376 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t10543     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2105981..2116376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOB_RS10510 thiE 2106580..2107220 (-) 641 Protein_2028 thiamine phosphate synthase -
  ACFIOB_RS10515 thiM 2107222..2108013 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  ACFIOB_RS10520 thiD 2107997..2108827 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOB_RS10525 tenA 2108820..2109509 (-) 690 WP_000396063.1 thiaminase II -
  ACFIOB_RS10530 sceD 2109897..2110592 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  ACFIOB_RS10535 ssb 2110981..2111376 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOB_RS10540 - 2111570..2112010 (+) 441 WP_000846751.1 YwpF-like family protein -
  ACFIOB_RS10545 fabZ 2112066..2112506 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOB_RS10550 murA 2112540..2113805 (-) 1266 WP_000358005.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOB_RS10555 - 2113916..2114149 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOB_RS10560 - 2114746..2115150 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1056787 ACFIOB_RS10535 WP_000932694.1 2110981..2111376(-) (ssb) [Staphylococcus aureus strain t10543]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1056787 ACFIOB_RS10535 WP_000932694.1 2110981..2111376(-) (ssb) [Staphylococcus aureus strain t10543]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment