Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOB_RS02595 Genome accession   NZ_CP170401
Coordinates   542883..543452 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t10543     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 537883..548452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOB_RS02570 cysE 539096..539743 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACFIOB_RS02575 cysS 539727..541127 (+) 1401 WP_000631980.1 cysteine--tRNA ligase -
  ACFIOB_RS02580 - 541120..541524 (+) 405 WP_000370179.1 Mini-ribonuclease 3 -
  ACFIOB_RS02585 rlmB 541532..542278 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOB_RS02590 - 542278..542802 (+) 525 WP_000664731.1 NYN domain-containing protein -
  ACFIOB_RS02595 sigH 542883..543452 (+) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOB_RS02600 rpmG 543567..543710 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOB_RS02605 secE 543766..543948 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOB_RS02610 nusG 543961..544509 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOB_RS02615 rplK 544690..545112 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOB_RS02620 rplA 545320..546012 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOB_RS02625 rplJ 546284..546784 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOB_RS02630 rplL 546827..547195 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOB_RS02635 - 547370..547978 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=1056755 ACFIOB_RS02595 WP_000872878.1 542883..543452(+) (sigH) [Staphylococcus aureus strain t10543]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1056755 ACFIOB_RS02595 WP_000872878.1 542883..543452(+) (sigH) [Staphylococcus aureus strain t10543]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment