Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFION_RS11620 Genome accession   NZ_CP170399
Coordinates   2299578..2300147 (-) Length   189 a.a.
NCBI ID   WP_410531227.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t127     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2294578..2305147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFION_RS11580 - 2295052..2295660 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  ACFION_RS11585 rplL 2295835..2296203 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFION_RS11590 rplJ 2296246..2296746 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  ACFION_RS11595 rplA 2297018..2297710 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFION_RS11600 rplK 2297918..2298340 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFION_RS11605 nusG 2298521..2299069 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFION_RS11610 secE 2299082..2299264 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFION_RS11615 rpmG 2299320..2299463 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFION_RS11620 sigH 2299578..2300147 (-) 570 WP_410531227.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFION_RS11625 - 2300228..2300752 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACFION_RS11630 rlmB 2300752..2301498 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFION_RS11635 - 2301506..2301910 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFION_RS11640 cysS 2301903..2303303 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  ACFION_RS11645 cysE 2303287..2303934 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23135.02 Da        Isoelectric Point: 9.6016

>NTDB_id=1056744 ACFION_RS11620 WP_410531227.1 2299578..2300147(-) (sigH) [Staphylococcus aureus strain t127]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSVFEKDVMYLMCEQYKPREI
AHLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1056744 ACFION_RS11620 WP_410531227.1 2299578..2300147(-) (sigH) [Staphylococcus aureus strain t127]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGTATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCATCTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment