Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8630_RS02865 Genome accession   NZ_AP028414
Coordinates   547512..548162 (-) Length   216 a.a.
NCBI ID   WP_002857159.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12583     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 542512..553162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8630_RS02830 (I12583_05540) - 542890..543894 (+) 1005 WP_002852264.1 membrane protein -
  R8630_RS02835 (I12583_05550) tlyA 543891..544652 (+) 762 WP_002856959.1 TlyA family RNA methyltransferase -
  R8630_RS02840 (I12583_05560) ribF 544618..545472 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  R8630_RS02845 (I12583_05570) cmoA 545459..546169 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8630_RS02850 (I12583_05580) - 546159..546380 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R8630_RS02855 (I12583_05590) - 546377..546811 (-) 435 WP_317667464.1 EexN family lipoprotein -
  R8630_RS02860 (I12583_05600) - 546869..547501 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  R8630_RS02865 (I12583_05610) CJE0566 547512..548162 (-) 651 WP_002857159.1 DNA/RNA non-specific endonuclease Regulator
  R8630_RS02870 (I12583_05620) nth 548159..548785 (-) 627 WP_002857170.1 endonuclease III -
  R8630_RS02875 (I12583_05630) peb4 548866..549687 (+) 822 WP_002856774.1 peptidylprolyl isomerase PEB4 -
  R8630_RS02880 (I12583_05640) fbaA 549687..550751 (+) 1065 WP_002856965.1 class II fructose-bisphosphate aldolase -
  R8630_RS02885 (I12583_05650) - 550846..552288 (+) 1443 WP_002857090.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25504.28 Da        Isoelectric Point: 9.8188

>NTDB_id=105674 R8630_RS02865 WP_002857159.1 547512..548162(-) (CJE0566) [Campylobacter jejuni strain IDH-12583]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSSYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNNENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105674 R8630_RS02865 WP_002857159.1 547512..548162(-) (CJE0566) [Campylobacter jejuni strain IDH-12583]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTAGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAGGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAGATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATAATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment