Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACFION_RS08395 | Genome accession | NZ_CP170399 |
| Coordinates | 1647816..1648259 (-) | Length | 147 a.a. |
| NCBI ID | WP_001099009.1 | Uniprot ID | A0A0C6EXF8 |
| Organism | Staphylococcus aureus strain t127 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1612053..1655681 | 1647816..1648259 | within | 0 |
Gene organization within MGE regions
Location: 1612053..1655681
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFION_RS08130 | - | 1612053..1612736 (-) | 684 | WP_000180531.1 | restriction endonuclease | - |
| ACFION_RS08135 | - | 1612733..1612915 (-) | 183 | WP_000990948.1 | hypothetical protein | - |
| ACFION_RS08140 | - | 1613013..1614062 (-) | 1050 | WP_000405105.1 | hypothetical protein | - |
| ACFION_RS08145 | - | 1614461..1615915 (-) | 1455 | WP_000909217.1 | N-acetylmuramoyl-L-alanine amidase | - |
| ACFION_RS08150 | - | 1615926..1616228 (-) | 303 | WP_000339141.1 | phage holin | - |
| ACFION_RS08155 | - | 1616284..1616679 (-) | 396 | WP_000398878.1 | hypothetical protein | - |
| ACFION_RS08160 | - | 1616684..1617922 (-) | 1239 | WP_038412581.1 | BppU family phage baseplate upper protein | - |
| ACFION_RS08165 | - | 1617935..1619809 (-) | 1875 | WP_000524040.1 | glucosaminidase domain-containing protein | - |
| ACFION_RS08170 | - | 1619946..1620245 (-) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| ACFION_RS08175 | - | 1620286..1620459 (-) | 174 | WP_001790193.1 | XkdX family protein | - |
| ACFION_RS08180 | - | 1620463..1620840 (-) | 378 | WP_000705921.1 | DUF2977 domain-containing protein | - |
| ACFION_RS08185 | - | 1620840..1622663 (-) | 1824 | WP_029052110.1 | phage baseplate upper protein | - |
| ACFION_RS08190 | - | 1622663..1624561 (-) | 1899 | WP_054189010.1 | hypothetical protein | - |
| ACFION_RS08195 | - | 1624574..1626460 (-) | 1887 | WP_168752845.1 | SGNH/GDSL hydrolase family protein | - |
| ACFION_RS08200 | - | 1626471..1627412 (-) | 942 | WP_000560181.1 | phage tail domain-containing protein | - |
| ACFION_RS08205 | - | 1627427..1630312 (-) | 2886 | WP_077517555.1 | terminase | - |
| ACFION_RS08210 | - | 1630316..1630600 (-) | 285 | WP_000880587.1 | hypothetical protein | - |
| ACFION_RS08215 | - | 1630645..1631151 (-) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| ACFION_RS08220 | - | 1631218..1631775 (-) | 558 | WP_000057582.1 | tail protein | - |
| ACFION_RS08225 | - | 1631776..1632201 (-) | 426 | WP_000270192.1 | DUF3168 domain-containing protein | - |
| ACFION_RS08230 | - | 1632214..1632627 (-) | 414 | WP_168752846.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ACFION_RS08235 | - | 1632614..1632949 (-) | 336 | WP_000483040.1 | phage head closure protein | - |
| ACFION_RS08240 | - | 1632961..1633311 (-) | 351 | WP_000177352.1 | hypothetical protein | - |
| ACFION_RS08245 | - | 1633317..1633460 (-) | 144 | WP_000002931.1 | hypothetical protein | - |
| ACFION_RS08250 | - | 1633472..1634386 (-) | 915 | WP_000235168.1 | phage major capsid protein | - |
| ACFION_RS08255 | - | 1634403..1634987 (-) | 585 | WP_001019221.1 | DUF4355 domain-containing protein | - |
| ACFION_RS08260 | - | 1635090..1635296 (-) | 207 | WP_000346032.1 | hypothetical protein | - |
| ACFION_RS08265 | - | 1635298..1636251 (-) | 954 | WP_410531209.1 | phage head morphogenesis protein | - |
| ACFION_RS08270 | - | 1636220..1637644 (-) | 1425 | WP_000177426.1 | phage portal protein | - |
| ACFION_RS08275 | - | 1637641..1638864 (-) | 1224 | WP_001037578.1 | PBSX family phage terminase large subunit | - |
| ACFION_RS08280 | - | 1638857..1639318 (-) | 462 | WP_001794914.1 | hypothetical protein | - |
| ACFION_RS08285 | - | 1639682..1640104 (-) | 423 | WP_000162701.1 | RinA family phage transcriptional activator | - |
| ACFION_RS08290 | - | 1640128..1640274 (-) | 147 | WP_000990005.1 | hypothetical protein | - |
| ACFION_RS08295 | rinB | 1640275..1640448 (-) | 174 | WP_000595258.1 | transcriptional activator RinB | - |
| ACFION_RS08300 | - | 1640495..1641019 (-) | 525 | WP_015984519.1 | hypothetical protein | - |
| ACFION_RS08305 | - | 1641019..1641213 (-) | 195 | WP_015984518.1 | DUF1381 domain-containing protein | - |
| ACFION_RS08310 | - | 1641250..1641786 (-) | 537 | WP_015984517.1 | dUTPase | - |
| ACFION_RS08315 | - | 1641779..1641949 (-) | 171 | WP_000714413.1 | hypothetical protein | - |
| ACFION_RS08320 | - | 1641936..1642190 (-) | 255 | WP_017804684.1 | DUF1024 family protein | - |
| ACFION_RS08325 | - | 1642183..1642548 (-) | 366 | WP_001624703.1 | hypothetical protein | - |
| ACFION_RS08330 | - | 1642545..1642994 (-) | 450 | WP_000982708.1 | YopX family protein | - |
| ACFION_RS08335 | - | 1643059..1643301 (-) | 243 | WP_015984514.1 | SAV1978 family virulence-associated passenger protein | - |
| ACFION_RS08340 | - | 1643305..1643661 (-) | 357 | WP_000029376.1 | SA1788 family PVL leukocidin-associated protein | - |
| ACFION_RS08345 | - | 1643789..1644094 (-) | 306 | WP_000101252.1 | hypothetical protein | - |
| ACFION_RS08350 | - | 1644095..1644280 (-) | 186 | WP_001187243.1 | DUF3113 family protein | - |
| ACFION_RS08355 | - | 1644285..1644689 (-) | 405 | WP_000049794.1 | DUF1064 domain-containing protein | - |
| ACFION_RS08360 | - | 1644699..1644920 (-) | 222 | WP_015984512.1 | DUF3269 family protein | - |
| ACFION_RS08365 | - | 1644933..1645091 (-) | 159 | WP_000256589.1 | hypothetical protein | - |
| ACFION_RS08370 | - | 1645085..1645864 (-) | 780 | WP_000803062.1 | ATP-binding protein | - |
| ACFION_RS08375 | - | 1645874..1646644 (-) | 771 | WP_000190253.1 | conserved phage C-terminal domain-containing protein | - |
| ACFION_RS08380 | - | 1646710..1646991 (+) | 282 | WP_000414755.1 | hypothetical protein | - |
| ACFION_RS08385 | - | 1646984..1647133 (-) | 150 | WP_001081076.1 | hypothetical protein | - |
| ACFION_RS08390 | - | 1647130..1647804 (-) | 675 | WP_000057263.1 | putative HNHc nuclease | - |
| ACFION_RS08395 | ssbA | 1647816..1648259 (-) | 444 | WP_001099009.1 | single-stranded DNA-binding protein | Machinery gene |
| ACFION_RS08400 | - | 1648256..1648906 (-) | 651 | WP_000840496.1 | ERF family protein | - |
| ACFION_RS08405 | - | 1648907..1649443 (-) | 537 | WP_001004336.1 | host-nuclease inhibitor Gam family protein | - |
| ACFION_RS08410 | - | 1649456..1649716 (-) | 261 | WP_000291067.1 | DUF1108 family protein | - |
| ACFION_RS08415 | - | 1649780..1650094 (-) | 315 | WP_031838381.1 | hypothetical protein | - |
| ACFION_RS08420 | - | 1650099..1650269 (-) | 171 | WP_033842703.1 | DUF1270 domain-containing protein | - |
| ACFION_RS08425 | - | 1650373..1651080 (-) | 708 | WP_168752764.1 | ORF6C domain-containing protein | - |
| ACFION_RS08430 | - | 1651140..1651622 (+) | 483 | WP_168752765.1 | hypothetical protein | - |
| ACFION_RS08435 | - | 1651856..1652110 (-) | 255 | WP_168752766.1 | helix-turn-helix domain-containing protein | - |
| ACFION_RS08440 | - | 1652301..1652939 (+) | 639 | WP_168752767.1 | XRE family transcriptional regulator | - |
| ACFION_RS08445 | - | 1652991..1653974 (+) | 984 | WP_168752768.1 | glycosyltransferase family 2 protein | - |
| ACFION_RS08450 | - | 1653985..1654227 (+) | 243 | WP_168752769.1 | hypothetical protein | - |
| ACFION_RS08455 | - | 1654290..1655681 (+) | 1392 | WP_410531215.1 | recombinase family protein | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 16321.89 Da Isoelectric Point: 5.8347
>NTDB_id=1056737 ACFION_RS08395 WP_001099009.1 1647816..1648259(-) (ssbA) [Staphylococcus aureus strain t127]
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF
MNTVNLIGNLVADPELKGQNNNVVNFVIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSY
ENNQGQKVFTTDIAVNNITFVERKNNGQSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF
Nucleotide
Download Length: 444 bp
>NTDB_id=1056737 ACFION_RS08395 WP_001099009.1 1647816..1648259(-) (ssbA) [Staphylococcus aureus strain t127]
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
ATGAATACAGTAAATTTAATTGGGAACCTAGTGGCAGATCCAGAGTTAAAAGGTCAAAACAACAACGTAGTTAACTTTGT
AATCGCAGTACAGAGACCATTCAAAAACAAACAAACTAACGAATATGAAACAGACTTCATTCGTTGTGTTGCATTTGGTA
AGACTGCTGAAATCATCGCTAATAACTTTAATAAAGGTAATAAAATTGGCGTTACTGGTTCAATACAAACCGGTAGTTAT
GAAAATAATCAAGGACAGAAAGTGTTTACTACAGACATCGCAGTCAACAATATAACTTTCGTTGAACGTAAAAACAACGG
TCAATCTAACAACCAACAACAGCATAATTCATATAACGCACCACAGAATAGACAGCAATCAAATAATCCATTTGCTAATG
CTAATGGTCCTATAGAAATCTCTGACGATGATTTACCTTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
41.279 |
100 |
0.483 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
38.235 |
100 |
0.442 |