Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOF_RS11470 Genome accession   NZ_CP170397
Coordinates   2262792..2263361 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t3841     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2257792..2268361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOF_RS11430 - 2258266..2258874 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  ACFIOF_RS11435 rplL 2259049..2259417 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOF_RS11440 rplJ 2259460..2259960 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOF_RS11445 rplA 2260232..2260924 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOF_RS11450 rplK 2261132..2261554 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOF_RS11455 nusG 2261735..2262283 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOF_RS11460 secE 2262296..2262478 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOF_RS11465 rpmG 2262534..2262677 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOF_RS11470 sigH 2262792..2263361 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOF_RS11475 - 2263442..2263966 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOF_RS11480 rlmB 2263966..2264712 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOF_RS11485 - 2264720..2265124 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOF_RS11490 cysS 2265117..2266517 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  ACFIOF_RS11495 cysE 2266501..2267148 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=1056701 ACFIOF_RS11470 WP_000872876.1 2262792..2263361(-) (sigH) [Staphylococcus aureus strain t3841]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1056701 ACFIOF_RS11470 WP_000872876.1 2262792..2263361(-) (sigH) [Staphylococcus aureus strain t3841]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment