Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOF_RS09270 Genome accession   NZ_CP170397
Coordinates   1830070..1831056 (-) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t3841     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1825070..1836056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOF_RS09245 - 1825330..1825677 (-) 348 WP_001242102.1 hypothetical protein -
  ACFIOF_RS09250 - 1825863..1826456 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  ACFIOF_RS09255 - 1826560..1826925 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  ACFIOF_RS09260 yjbH 1826948..1827754 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  ACFIOF_RS09265 pepF 1828214..1830022 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  ACFIOF_RS09270 coiA 1830070..1831056 (-) 987 WP_000959289.1 competence protein CoiA Machinery gene
  ACFIOF_RS09275 mecA 1831177..1831896 (-) 720 WP_001217728.1 adaptor protein MecA -
  ACFIOF_RS09280 spxA 1832267..1832662 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOF_RS09285 trpS 1832957..1833946 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  ACFIOF_RS09290 opp4C 1833988..1834869 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  ACFIOF_RS09295 opp4B 1834881..1835843 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=1056695 ACFIOF_RS09270 WP_000959289.1 1830070..1831056(-) (coiA) [Staphylococcus aureus strain t3841]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1056695 ACFIOF_RS09270 WP_000959289.1 1830070..1831056(-) (coiA) [Staphylococcus aureus strain t3841]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979

Multiple sequence alignment