Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ACFIOF_RS06440 Genome accession   NZ_CP170397
Coordinates   1224860..1225357 (+) Length   165 a.a.
NCBI ID   WP_001829055.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t3841     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1219860..1230357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOF_RS06400 - 1219904..1220890 (+) 987 WP_000161314.1 ROK family glucokinase -
  ACFIOF_RS06405 - 1220890..1221219 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACFIOF_RS06410 - 1221216..1221839 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ACFIOF_RS06415 comGA 1221891..1222865 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ACFIOF_RS06420 comGB 1222837..1223907 (+) 1071 WP_017804891.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACFIOF_RS06425 comGC 1223921..1224232 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFIOF_RS06430 comGD 1224210..1224656 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACFIOF_RS06435 comGE 1224643..1224942 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  ACFIOF_RS06440 comGF 1224860..1225357 (+) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACFIOF_RS06445 - 1225454..1225600 (+) 147 WP_001789879.1 hypothetical protein -
  ACFIOF_RS06450 - 1225590..1226114 (+) 525 WP_001015121.1 shikimate kinase -
  ACFIOF_RS06455 gcvT 1226273..1227364 (+) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  ACFIOF_RS06460 gcvPA 1227384..1228730 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACFIOF_RS06465 gcvPB 1228723..1230195 (+) 1473 WP_000202187.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19183.92 Da        Isoelectric Point: 10.2192

>NTDB_id=1056688 ACFIOF_RS06440 WP_001829055.1 1224860..1225357(+) (comGF) [Staphylococcus aureus strain t3841]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1056688 ACFIOF_RS06440 WP_001829055.1 1224860..1225357(+) (comGF) [Staphylococcus aureus strain t3841]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

98.182

100

0.982

Multiple sequence alignment