Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACFIOF_RS06185 Genome accession   NZ_CP170397
Coordinates   1177225..1177911 (+) Length   228 a.a.
NCBI ID   WP_078064814.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t3841     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1172225..1182911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOF_RS06150 yqeH 1172752..1173852 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  ACFIOF_RS06155 aroE 1173866..1174672 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  ACFIOF_RS06160 yhbY 1174676..1174966 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOF_RS06165 nadD 1174969..1175538 (+) 570 WP_000725168.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOF_RS06170 yqeK 1175528..1176112 (+) 585 WP_001019322.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOF_RS06175 rsfS 1176113..1176466 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOF_RS06180 - 1176469..1177185 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOF_RS06185 comEA 1177225..1177911 (+) 687 WP_078064814.1 ComEA family DNA-binding protein Machinery gene
  ACFIOF_RS06190 - 1178003..1178464 (+) 462 WP_000439691.1 ComE operon protein 2 -
  ACFIOF_RS06195 comEC 1178469..1180670 (+) 2202 WP_025176217.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFIOF_RS06200 holA 1180727..1181701 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  ACFIOF_RS06205 rpsT 1181746..1181997 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25842.52 Da        Isoelectric Point: 9.5276

>NTDB_id=1056680 ACFIOF_RS06185 WP_078064814.1 1177225..1177911(+) (comEA) [Staphylococcus aureus strain t3841]
MVLLYQFLLHYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1056680 ACFIOF_RS06185 WP_078064814.1 1177225..1177911(+) (comEA) [Staphylococcus aureus strain t3841]
GTGGTTTTATTGTATCAATTTTTATTACACTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.119

99.561

0.987
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment