Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8569_RS07645 Genome accession   NZ_AP028413
Coordinates   1482586..1482897 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12448     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477586..1487897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8569_RS07625 (I12448_14970) ctsE 1478455..1480014 (-) 1560 WP_317648284.1 GspE/PulE family protein Machinery gene
  R8569_RS07630 (I12448_14980) ctsX 1480004..1480591 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  R8569_RS07635 (I12448_14990) ctsP 1480595..1481203 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  R8569_RS07640 (I12448_15000) ctsD 1481196..1482608 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8569_RS07645 (I12448_15010) ctsR 1482586..1482897 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R8569_RS07650 (I12448_15020) nifJ 1482921..1486481 (-) 3561 WP_317648287.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8569_RS07655 (I12448_15030) - 1486574..1487215 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=105667 R8569_RS07645 WP_002862131.1 1482586..1482897(-) (ctsR) [Campylobacter jejuni strain IDH-12448]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105667 R8569_RS07645 WP_002862131.1 1482586..1482897(-) (ctsR) [Campylobacter jejuni strain IDH-12448]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment