Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   R8569_RS07640 Genome accession   NZ_AP028413
Coordinates   1481196..1482608 (-) Length   470 a.a.
NCBI ID   WP_002867037.1    Uniprot ID   A0A5Y8ZU08
Organism   Campylobacter jejuni strain IDH-12448     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476196..1487608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8569_RS07615 (I12448_14950) - 1476520..1477284 (+) 765 WP_002867032.1 TSUP family transporter -
  R8569_RS07620 (I12448_14960) ctsF 1477277..1478458 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  R8569_RS07625 (I12448_14970) ctsE 1478455..1480014 (-) 1560 WP_317648284.1 GspE/PulE family protein Machinery gene
  R8569_RS07630 (I12448_14980) ctsX 1480004..1480591 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  R8569_RS07635 (I12448_14990) ctsP 1480595..1481203 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  R8569_RS07640 (I12448_15000) ctsD 1481196..1482608 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8569_RS07645 (I12448_15010) ctsR 1482586..1482897 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R8569_RS07650 (I12448_15020) nifJ 1482921..1486481 (-) 3561 WP_317648287.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8569_RS07655 (I12448_15030) - 1486574..1487215 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53083.63 Da        Isoelectric Point: 6.6184

>NTDB_id=105666 R8569_RS07640 WP_002867037.1 1481196..1482608(-) (ctsD) [Campylobacter jejuni strain IDH-12448]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKVTEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=105666 R8569_RS07640 WP_002867037.1 1481196..1482608(-) (ctsD) [Campylobacter jejuni strain IDH-12448]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGTCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTCCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGCGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGTAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAACGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y8ZU08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.362

100

0.994

Multiple sequence alignment