Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOF_RS03260 Genome accession   NZ_CP170397
Coordinates   649251..649646 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t3841     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 644251..654646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOF_RS03230 - 645478..645882 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACFIOF_RS03235 - 646252..646344 (+) 93 WP_031864518.1 hypothetical protein -
  ACFIOF_RS03240 - 646476..646709 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOF_RS03245 murA 646820..648085 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOF_RS03250 fabZ 648119..648559 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOF_RS03255 - 648617..649057 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOF_RS03260 ssb 649251..649646 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOF_RS03265 sceD 650035..650730 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  ACFIOF_RS03270 tenA 651311..652000 (+) 690 WP_000396059.1 thiaminase II -
  ACFIOF_RS03275 thiD 651993..652823 (+) 831 WP_000594948.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOF_RS03280 thiM 652807..653598 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  ACFIOF_RS03285 thiE 653600..654241 (+) 642 WP_000483164.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1056668 ACFIOF_RS03260 WP_000932694.1 649251..649646(+) (ssb) [Staphylococcus aureus strain t3841]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1056668 ACFIOF_RS03260 WP_000932694.1 649251..649646(+) (ssb) [Staphylococcus aureus strain t3841]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment