Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOJ_RS10870 Genome accession   NZ_CP170391
Coordinates   2196953..2197522 (-) Length   189 a.a.
NCBI ID   WP_410532823.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21642     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2191953..2202522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOJ_RS10830 - 2192428..2193036 (-) 609 WP_054190480.1 class I SAM-dependent methyltransferase -
  ACFIOJ_RS10835 rplL 2193211..2193579 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOJ_RS10840 rplJ 2193621..2194121 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOJ_RS10845 rplA 2194393..2195085 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOJ_RS10850 rplK 2195293..2195715 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOJ_RS10855 nusG 2195896..2196444 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOJ_RS10860 secE 2196457..2196639 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOJ_RS10865 rpmG 2196695..2196838 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOJ_RS10870 sigH 2196953..2197522 (-) 570 WP_410532823.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOJ_RS10875 - 2197603..2198127 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOJ_RS10880 rlmB 2198127..2198873 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOJ_RS10885 - 2198881..2199285 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOJ_RS10890 cysS 2199278..2200678 (-) 1401 WP_054190482.1 cysteine--tRNA ligase -
  ACFIOJ_RS10895 cysE 2200662..2201309 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23084.96 Da        Isoelectric Point: 9.7681

>NTDB_id=1056616 ACFIOJ_RS10870 WP_410532823.1 2196953..2197522(-) (sigH) [Staphylococcus aureus strain t21642]
MKYDLTTQDSTTKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKLKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1056616 ACFIOJ_RS10870 WP_410532823.1 2196953..2197522(-) (sigH) [Staphylococcus aureus strain t21642]
TTGAAATATGATTTGACAACTCAAGACAGTACAACCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCAAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAATTAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968

Multiple sequence alignment