Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOJ_RS08990 Genome accession   NZ_CP170391
Coordinates   1805907..1806893 (-) Length   328 a.a.
NCBI ID   WP_410532610.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21642     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1800907..1811893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOJ_RS08965 - 1801167..1801514 (-) 348 WP_001242107.1 hypothetical protein -
  ACFIOJ_RS08970 - 1801700..1802293 (+) 594 WP_410532609.1 CYTH domain-containing protein -
  ACFIOJ_RS08975 - 1802397..1802762 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  ACFIOJ_RS08980 yjbH 1802785..1803591 (+) 807 WP_054190361.1 protease adaptor protein YjbH -
  ACFIOJ_RS08985 pepF 1804051..1805859 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  ACFIOJ_RS08990 coiA 1805907..1806893 (-) 987 WP_410532610.1 competence protein CoiA Machinery gene
  ACFIOJ_RS08995 mecA 1807014..1807733 (-) 720 WP_054190363.1 adaptor protein MecA -
  ACFIOJ_RS09000 spxA 1808104..1808499 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOJ_RS09005 trpS 1808794..1809783 (+) 990 WP_000448941.1 tryptophan--tRNA ligase -
  ACFIOJ_RS09010 opp4C 1809872..1810753 (-) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  ACFIOJ_RS09015 opp4B 1810765..1811727 (-) 963 WP_054190365.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38851.30 Da        Isoelectric Point: 9.4149

>NTDB_id=1056612 ACFIOJ_RS08990 WP_410532610.1 1805907..1806893(-) (coiA) [Staphylococcus aureus strain t21642]
MLVALNEEKERVLATTALRKTQYFCPMCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
DIEPFLKEIKQIPDILINNKYVIELQYSPIPYKEILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLENKQIYKFHQLQSLGGNKYFAYKVKDCISELFNEAPCDYHTVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
ITDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLNDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1056612 ACFIOJ_RS08990 WP_410532610.1 1805907..1806893(-) (coiA) [Staphylococcus aureus strain t21642]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACGCAATATTTTTGTCCGAT
GTGTGGGAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GATATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAAGAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGGTATAAAGTGAGTTGGTTATTAA
ATGATGTTGATTACTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAAAATAAGCAAATATATAAATTTCATCAATTACAAAGTTTAGGCGGCAATAAGTATTTTGCGTA
TAAGGTGAAAGACTGTATTAGTGAGTTGTTTAATGAGGCACCTTGTGATTATCATACTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
ATAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGTAAATTACTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

92.378

100

0.924
  coiA Staphylococcus aureus N315

92.378

100

0.924

Multiple sequence alignment