Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACFIOJ_RS05965 Genome accession   NZ_CP170391
Coordinates   1160579..1161265 (+) Length   228 a.a.
NCBI ID   WP_410533912.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21642     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1155579..1166265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOJ_RS05925 - 1155579..1156106 (+) 528 WP_000524902.1 YqeG family HAD IIIA-type phosphatase -
  ACFIOJ_RS05930 yqeH 1156107..1157207 (+) 1101 WP_054190053.1 ribosome biogenesis GTPase YqeH -
  ACFIOJ_RS05935 aroE 1157221..1158026 (+) 806 Protein_1132 shikimate dehydrogenase -
  ACFIOJ_RS05940 yhbY 1158030..1158320 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOJ_RS05945 nadD 1158323..1158892 (+) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOJ_RS05950 yqeK 1158882..1159466 (+) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOJ_RS05955 rsfS 1159467..1159820 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOJ_RS05960 - 1159823..1160539 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOJ_RS05965 comEA 1160579..1161265 (+) 687 WP_410533912.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACFIOJ_RS05970 - 1161357..1161818 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ACFIOJ_RS05975 - 1161823..1164025 (+) 2203 Protein_1140 DNA internalization-related competence protein ComEC/Rec2 -
  ACFIOJ_RS05980 holA 1164082..1165056 (+) 975 WP_061822005.1 DNA polymerase III subunit delta -
  ACFIOJ_RS05985 rpsT 1165101..1165352 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25921.58 Da        Isoelectric Point: 9.3381

>NTDB_id=1056598 ACFIOJ_RS05965 WP_410533912.1 1160579..1161265(+) (comEA) [Staphylococcus aureus strain t21642]
MVLLYQFLLRYRDFLTQWKLYIISAVVLIMILIGFIFWRQDDYTSRDFENKDTALKQSTSENNSLSKLEDVQVKDGDNFK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASESELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1056598 ACFIOJ_RS05965 WP_410533912.1 1160579..1161265(+) (comEA) [Staphylococcus aureus strain t21642]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAGAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGATATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTTCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGAATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAGGGGT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

96.916

99.561

0.965
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956

Multiple sequence alignment