Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOJ_RS03155 Genome accession   NZ_CP170391
Coordinates   639517..639912 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21642     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 634517..644912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOJ_RS03130 - 635815..636219 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACFIOJ_RS03135 - 636743..636976 (+) 234 WP_410533542.1 DUF1146 family protein -
  ACFIOJ_RS03140 murA 637087..638352 (+) 1266 WP_054190451.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOJ_RS03145 fabZ 638386..638826 (+) 441 WP_410533544.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOJ_RS03150 - 638883..639323 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOJ_RS03155 ssb 639517..639912 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOJ_RS03160 sceD 640301..640996 (+) 696 WP_410533546.1 lytic transglycosylase SceD -
  ACFIOJ_RS03165 tenA 641384..642073 (+) 690 WP_410533548.1 thiaminase II -
  ACFIOJ_RS03170 thiD 642066..642896 (+) 831 WP_054190446.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOJ_RS03175 thiM 642880..643671 (+) 792 WP_410533550.1 hydroxyethylthiazole kinase -
  ACFIOJ_RS03180 thiE 643673..644314 (+) 642 WP_054190444.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1056588 ACFIOJ_RS03155 WP_000932694.1 639517..639912(+) (ssb) [Staphylococcus aureus strain t21642]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1056588 ACFIOJ_RS03155 WP_000932694.1 639517..639912(+) (ssb) [Staphylococcus aureus strain t21642]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTCGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment