Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACFIOH_RS11145 Genome accession   NZ_CP170389
Coordinates   2231735..2232304 (-) Length   189 a.a.
NCBI ID   WP_054190481.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t14667     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2226735..2237304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOH_RS11105 - 2227210..2227818 (-) 609 WP_054190480.1 class I SAM-dependent methyltransferase -
  ACFIOH_RS11110 rplL 2227993..2228361 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACFIOH_RS11115 rplJ 2228403..2228903 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACFIOH_RS11120 rplA 2229175..2229867 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACFIOH_RS11125 rplK 2230075..2230497 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACFIOH_RS11130 nusG 2230678..2231226 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACFIOH_RS11135 secE 2231239..2231421 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACFIOH_RS11140 rpmG 2231477..2231620 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACFIOH_RS11145 sigH 2231735..2232304 (-) 570 WP_054190481.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACFIOH_RS11150 - 2232385..2232909 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACFIOH_RS11155 rlmB 2232909..2233655 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFIOH_RS11160 - 2233663..2234067 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACFIOH_RS11165 cysS 2234060..2235460 (-) 1401 WP_054190482.1 cysteine--tRNA ligase -
  ACFIOH_RS11170 cysE 2235444..2236091 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23085.90 Da        Isoelectric Point: 9.6015

>NTDB_id=1056578 ACFIOH_RS11145 WP_054190481.1 2231735..2232304(-) (sigH) [Staphylococcus aureus strain t14667]
MEYDLTTQDSTTKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1056578 ACFIOH_RS11145 WP_054190481.1 2231735..2232304(-) (sigH) [Staphylococcus aureus strain t14667]
TTGGAATATGATTTGACAACTCAAGACAGTACAACCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCAAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968

Multiple sequence alignment