Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFIOH_RS09265 Genome accession   NZ_CP170389
Coordinates   1843509..1844495 (-) Length   328 a.a.
NCBI ID   WP_054190362.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t14667     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838509..1849495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOH_RS09240 - 1838769..1839116 (-) 348 WP_054190359.1 hypothetical protein -
  ACFIOH_RS09245 - 1839302..1839895 (+) 594 WP_054190360.1 CYTH domain-containing protein -
  ACFIOH_RS09250 - 1839999..1840364 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  ACFIOH_RS09255 yjbH 1840387..1841193 (+) 807 WP_054190361.1 protease adaptor protein YjbH -
  ACFIOH_RS09260 pepF 1841653..1843461 (-) 1809 WP_070016683.1 oligoendopeptidase F -
  ACFIOH_RS09265 coiA 1843509..1844495 (-) 987 WP_054190362.1 competence protein CoiA Machinery gene
  ACFIOH_RS09270 mecA 1844616..1845335 (-) 720 WP_054190363.1 adaptor protein MecA -
  ACFIOH_RS09275 spxA 1845706..1846101 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  ACFIOH_RS09280 trpS 1846396..1847385 (+) 990 WP_054190364.1 tryptophan--tRNA ligase -
  ACFIOH_RS09285 opp4C 1847473..1848354 (-) 882 WP_410531013.1 oligopeptide ABC transporter permease -
  ACFIOH_RS09290 opp4B 1848366..1849328 (-) 963 WP_054190365.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38854.26 Da        Isoelectric Point: 9.3244

>NTDB_id=1056573 ACFIOH_RS09265 WP_054190362.1 1843509..1844495(-) (coiA) [Staphylococcus aureus strain t14667]
MLVALNEEKERVLATTALRKTQYFCPMCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
DIEPFLKEIKQIPDILINNKYVIELQYSPIPYKEILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFDLENKQIYKFHQLQSLGGNKYFAYKTKDCISELFNETPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLNDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1056573 ACFIOH_RS09265 WP_054190362.1 1843509..1844495(-) (coiA) [Staphylococcus aureus strain t14667]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACGCAATATTTTTGTCCGAT
GTGTGGGAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GATATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAAGAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGGTATAAAGTGAGTTGGTTATTAA
ATGATGTTGATTACTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAACCCAATCACTCGAAAACTT
CATACGTTTGATTTAGAAAATAAGCAAATATATAAATTTCATCAATTACAAAGTTTAGGCGGCAATAAGTATTTTGCGTA
TAAGACGAAAGACTGTATTAGTGAGTTGTTTAATGAGACGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATTAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAACAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

92.378

100

0.924
  coiA Staphylococcus aureus N315

92.378

100

0.924

Multiple sequence alignment