Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   R8569_RS06585 Genome accession   NZ_AP028413
Coordinates   1273669..1274319 (-) Length   216 a.a.
NCBI ID   WP_052804596.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12448     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268669..1279319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8569_RS06530 (I12448_12800) - 1268734..1269210 (-) 477 WP_214283276.1 hypothetical protein -
  R8569_RS06535 (I12448_12810) - 1269225..1270229 (-) 1005 WP_052804590.1 toxic anion resistance protein -
  R8569_RS06540 (I12448_12820) - 1270342..1270695 (-) 354 WP_172669858.1 hypothetical protein -
  R8569_RS06545 (I12448_12830) - 1270724..1270966 (-) 243 WP_052804591.1 hypothetical protein -
  R8569_RS06550 (I12448_12840) - 1270970..1271146 (-) 177 WP_153605354.1 hypothetical protein -
  R8569_RS06555 (I12448_12850) - 1271241..1271468 (-) 228 WP_052783806.1 hypothetical protein -
  R8569_RS06560 (I12448_12860) - 1271489..1271956 (-) 468 WP_052804592.1 hypothetical protein -
  R8569_RS06565 (I12448_12870) - 1271975..1272472 (-) 498 WP_052804593.1 hypothetical protein -
  R8569_RS06570 (I12448_12880) - 1272498..1272686 (-) 189 WP_052804594.1 hypothetical protein -
  R8569_RS06575 (I12448_12890) - 1272757..1273263 (-) 507 WP_052804595.1 hypothetical protein -
  R8569_RS06580 (I12448_12900) - 1273271..1273489 (-) 219 WP_002801018.1 hypothetical protein -
  R8569_RS06585 (I12448_12910) CJE1441 1273669..1274319 (-) 651 WP_052804596.1 DNA/RNA non-specific endonuclease Regulator
  R8569_RS06590 (I12448_12920) - 1274338..1274985 (-) 648 WP_052804597.1 hypothetical protein -
  R8569_RS06595 (I12448_12930) - 1274982..1275497 (-) 516 WP_052804598.1 hypothetical protein -
  R8569_RS06600 (I12448_12940) - 1275566..1275748 (-) 183 WP_002897189.1 YlcI/YnfO family protein -
  R8569_RS06605 (I12448_12950) - 1275778..1276197 (-) 420 WP_052804599.1 hypothetical protein -
  R8569_RS06610 (I12448_12960) - 1276194..1276685 (-) 492 WP_019108664.1 YopX family protein -
  R8569_RS06615 (I12448_12970) - 1276869..1277219 (-) 351 WP_052804600.1 hypothetical protein -
  R8569_RS06620 (I12448_12980) - 1277216..1277407 (-) 192 WP_052804601.1 hypothetical protein -
  R8569_RS06625 (I12448_12990) - 1277409..1278077 (-) 669 WP_052804602.1 hypothetical protein -
  R8569_RS06630 (I12448_13000) - 1278082..1278501 (-) 420 WP_052804603.1 YopX family protein -
  R8569_RS06635 (I12448_13010) - 1278482..1278763 (-) 282 WP_002897254.1 hypothetical protein -
  R8569_RS06640 (I12448_13020) - 1278818..1279039 (-) 222 WP_002821399.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25423.88 Da        Isoelectric Point: 9.7867

>NTDB_id=105657 R8569_RS06585 WP_052804596.1 1273669..1274319(-) (CJE1441) [Campylobacter jejuni strain IDH-12448]
MKKLMILPLLATLAFADYTQYKPSEDFAKYFTTQNCSQVLDKFYYLNCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWGDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGSLEVL
NLVNYDSNPQRIRNQIAIPSSYTKILKGDNFKECYQVPNHEVENESIRSYQIKCQF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105657 R8569_RS06585 WP_052804596.1 1273669..1274319(-) (CJE1441) [Campylobacter jejuni strain IDH-12448]
ATGAAAAAACTTATGATTTTACCGTTGCTAGCAACTCTAGCTTTTGCTGATTATACACAATACAAACCAAGTGAAGATTT
TGCTAAGTATTTTACGACGCAAAACTGCTCACAAGTTTTAGATAAGTTTTATTATCTAAATTGCTATGATTATAATTATA
AAGGCACTAAAGCAGTAGCTTATAAATTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGGGTGATTATAAAAACAGCGGTTATGATAGAGGGCACACTCT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCTCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AGATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAACTTGGAAGTTTAGAAGTTTTA
AATTTAGTTAATTATGATAGTAATCCACAAAGAATAAGAAATCAAATTGCCATTCCAAGCTCTTACACTAAGATTTTAAA
AGGTGATAATTTTAAAGAATGTTATCAAGTGCCAAATCATGAAGTAGAAAATGAGAGCATAAGATCTTATCAGATCAAGT
GTCAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

91.589

99.074

0.907
  CJE0566 Campylobacter jejuni RM1221

91.589

99.074

0.907

Multiple sequence alignment