Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACFIOH_RS05880 Genome accession   NZ_CP170389
Coordinates   1145057..1145743 (+) Length   228 a.a.
NCBI ID   WP_077446658.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t14667     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1140057..1150743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOH_RS05845 yqeH 1140584..1141684 (+) 1101 WP_054190053.1 ribosome biogenesis GTPase YqeH -
  ACFIOH_RS05850 aroE 1141698..1142504 (+) 807 WP_054190052.1 shikimate dehydrogenase -
  ACFIOH_RS05855 yhbY 1142508..1142798 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ACFIOH_RS05860 nadD 1142801..1143370 (+) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACFIOH_RS05865 yqeK 1143360..1143944 (+) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACFIOH_RS05870 rsfS 1143945..1144298 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACFIOH_RS05875 - 1144301..1145017 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  ACFIOH_RS05880 comEA 1145057..1145743 (+) 687 WP_077446658.1 ComEA family DNA-binding protein Machinery gene
  ACFIOH_RS05885 - 1145835..1146296 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ACFIOH_RS05890 comEC 1146301..1148502 (+) 2202 WP_054190049.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFIOH_RS05895 holA 1148559..1149533 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACFIOH_RS05900 rpsT 1149578..1149829 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25873.54 Da        Isoelectric Point: 9.3381

>NTDB_id=1056558 ACFIOH_RS05880 WP_077446658.1 1145057..1145743(+) (comEA) [Staphylococcus aureus strain t14667]
MVLLYQFLLRYRDFLIQWKLYIISAVVLIMILIGFIFWRQDDYTSRDFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASESELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1056558 ACFIOH_RS05880 WP_077446658.1 1145057..1145743(+) (comEA) [Staphylococcus aureus strain t14667]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAGAGATTTTTTAATTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGATATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGAATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

96.916

99.561

0.965
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956

Multiple sequence alignment