Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOH_RS03170 Genome accession   NZ_CP170389
Coordinates   644285..644680 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t14667     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 639285..649680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOH_RS03145 - 640582..640986 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACFIOH_RS03150 - 641510..641743 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACFIOH_RS03155 murA 641854..643119 (+) 1266 WP_054190451.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFIOH_RS03160 fabZ 643153..643593 (+) 441 WP_054190450.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFIOH_RS03165 - 643651..644091 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACFIOH_RS03170 ssb 644285..644680 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACFIOH_RS03175 sceD 645069..645764 (+) 696 WP_054190448.1 lytic transglycosylase SceD -
  ACFIOH_RS03180 tenA 646151..646840 (+) 690 WP_054190447.1 thiaminase II -
  ACFIOH_RS03185 thiD 646833..647663 (+) 831 WP_054190446.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFIOH_RS03190 thiM 647647..648438 (+) 792 WP_054190445.1 hydroxyethylthiazole kinase -
  ACFIOH_RS03195 thiE 648440..649081 (+) 642 WP_054190444.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1056547 ACFIOH_RS03170 WP_000932694.1 644285..644680(+) (ssb) [Staphylococcus aureus strain t14667]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1056547 ACFIOH_RS03170 WP_000932694.1 644285..644680(+) (ssb) [Staphylococcus aureus strain t14667]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTCGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment