Detailed information NTG1056512

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: DYB47_RS09490
• Genome accession: NZ_UHFV01000002
• Coordinates: 1907068..1908153 (+)
• Length: 361 a.a.
• NCBI ID: WP_003082156.1
• Uniprot ID: G5JXJ1
• Organism: Streptococcus macacae NCTC 11558
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1902068..1913153

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DYB47_RS09465 (NCTC11558_01920)	pgsA	1902335..1902877 (-)	543	WP_003079419.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
DYB47_RS09470 (NCTC11558_01921)	-	1902891..1903913 (-)	1023	WP_003081725.1	helix-turn-helix domain-containing protein	-
DYB47_RS09475 (NCTC11558_01922)	yfmH	1903993..1905288 (-)	1296	WP_003081614.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
DYB47_RS09480 (NCTC11558_01923)	yfmF	1905290..1906537 (-)	1248	WP_003080446.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
DYB47_RS09485 (NCTC11558_01924)	yaaA	1906709..1907065 (+)	357	WP_003082107.1	S4 domain-containing protein YaaA	-
DYB47_RS09490 (NCTC11558_01925)	recF	1907068..1908153 (+)	1086	WP_003082156.1	DNA replication/repair protein RecF	Machinery gene
DYB47_RS09495 (NCTC11558_01926)	guaB	1908513..1909994 (-)	1482	WP_003080756.1	IMP dehydrogenase	-
DYB47_RS09500 (NCTC11558_01927)	trpS	1910163..1911185 (-)	1023	WP_003079823.1	tryptophan--tRNA ligase	-
DYB47_RS09505 (NCTC11558_01928)	-	1911355..1912980 (+)	1626	WP_003081086.1	ABC-F family ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 361 a.a.
• Molecular weight: 41675.70 Da
• Isoelectric Point: 9.7472

>NTDB_id=1056512 DYB47_RS09490 WP_003082156.1 1907068..1908153(+) (recF) [Streptococcus macacae NCTC 11558]
MWIKEINLKNYRNYNSIETNFSPKLNIFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIKFGEKELMVSGVINRVNGK
IPLEINLSDKGRTTKVNHLKQSKLSDYIGTMTVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKSIYLSDLSNYNHTLKQR
NTYLKTHKKIDFNFLSVLDEQLVNYGSRVIEHRLNFINDLSTEAKKHHLKISNQTETLRVSYLPSIKYDDQKNIQENFLS
QLQKNHQRDIFKKSTGIGPHRDDLEFFINEINASFGSQGQHRSLILSLKLAELELIKSASGDYPILLLDDVMSELDHFRQ
TKLLESISENVQAFITTTSLEHLTSLPKEFQLFTIKQGQIV

Nucleotide

• Length: 1086 bp

>NTDB_id=1056512 DYB47_RS09490 WP_003082156.1 1907068..1908153(+) (recF) [Streptococcus macacae NCTC 11558]
ATGTGGATTAAAGAAATTAACTTAAAGAATTACCGTAATTACAATTCAATTGAAACGAATTTCTCTCCCAAATTAAATAT
TTTTGTTGGCCAAAATGCACAAGGCAAAACAAATTTTTTAGAAGCTATTTATTTTCTTTCTTTAACACGCAGTCACCGGA
CAAGATCTGATAAAGAGTTAATAAAATTTGGAGAAAAAGAACTAATGGTTTCAGGAGTTATTAACCGCGTTAATGGAAAG
ATACCACTAGAAATTAATTTATCTGATAAAGGTAGGACAACCAAGGTAAATCACCTTAAACAATCCAAATTATCTGATTA
CATTGGGACAATGACTGTTGTCCTTTTCGCTCCCGAAGATTTACAACTTGTAAAGGGAGCTCCTAGTCTAAGAAGAAAAT
TTATTGATATCGATTTAGGGCAAATTAAATCAATATATTTATCTGATCTTTCAAATTATAATCATACTCTTAAACAAAGG
AATACTTATTTAAAAACACATAAGAAAATAGATTTTAATTTTCTTTCTGTCCTAGATGAACAATTAGTTAATTATGGCAG
CAGAGTTATTGAACATCGTTTGAATTTTATCAATGACTTATCAACAGAAGCCAAAAAGCACCACTTAAAAATTTCAAATC
AAACAGAAACATTAAGAGTTTCTTATCTTCCTTCCATCAAATATGATGATCAAAAAAATATTCAAGAGAATTTTTTATCT
CAATTACAAAAAAACCATCAGCGTGATATTTTTAAAAAAAGTACAGGAATTGGTCCTCATCGTGATGATTTAGAATTTTT
TATCAATGAAATAAATGCTAGTTTTGGAAGTCAAGGACAGCATCGCAGTCTTATCTTATCACTAAAGCTAGCAGAACTTG
AACTTATTAAATCAGCTTCTGGTGACTATCCTATTCTCTTATTAGATGATGTCATGAGTGAACTAGATCATTTTAGACAA
ACGAAACTTTTAGAAAGTATAAGTGAAAATGTTCAAGCCTTTATAACAACAACCAGCCTTGAACATCTTACAAGTCTTCC
CAAAGAATTTCAGCTATTCACAATTAAACAGGGGCAAATAGTATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-354)

3D structure

• AlphaFold DB: G5JXJ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.231	99.446	0.629
recF	Bacillus subtilis subsp. subtilis str. 168	43.089	100	0.44