Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   O1Q79_RS02890 Genome accession   NZ_CP170386
Coordinates   580009..580962 (+) Length   317 a.a.
NCBI ID   WP_386692865.1    Uniprot ID   -
Organism   Lonepinella sp. MS14434     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 575009..585962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q79_RS02865 (O1Q79_00568) - 575396..576226 (+) 831 WP_386685896.1 SirB1 family protein -
  O1Q79_RS02870 (O1Q79_00569) kdsA 576239..577093 (+) 855 WP_386685898.1 3-deoxy-8-phosphooctulonate synthase -
  O1Q79_RS02875 (O1Q79_00570) sfsA 577297..578013 (-) 717 WP_386692862.1 DNA/RNA nuclease SfsA -
  O1Q79_RS02880 (O1Q79_00571) - 578106..578375 (+) 270 WP_386692863.1 YcgL domain-containing protein -
  O1Q79_RS02885 (O1Q79_00572) mepM 578436..579878 (+) 1443 WP_386692864.1 murein DD-endopeptidase MepM -
  O1Q79_RS02890 (O1Q79_00573) ceuB 580009..580962 (+) 954 WP_386692865.1 ABC transporter permease Machinery gene
  O1Q79_RS02895 (O1Q79_00574) - 580975..581922 (+) 948 WP_386693338.1 iron chelate uptake ABC transporter family permease subunit -
  O1Q79_RS02900 (O1Q79_00575) - 581929..582690 (+) 762 WP_386692866.1 ABC transporter ATP-binding protein -
  O1Q79_RS02905 (O1Q79_00576) - 582726..583637 (+) 912 WP_386692867.1 siderophore ABC transporter substrate-binding protein -
  O1Q79_RS02910 (O1Q79_00577) ompA 584002..585084 (+) 1083 WP_386692868.1 porin OmpA -
  O1Q79_RS02915 (O1Q79_00578) - 585171..585752 (+) 582 WP_386692870.1 LemA family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34597.70 Da        Isoelectric Point: 9.6458

>NTDB_id=1056512 O1Q79_RS02890 WP_386692865.1 580009..580962(+) (ceuB) [Lonepinella sp. MS14434]
MIKRRYLFLLVILLSVLSLFIGVSTVNLTGLFALDGEQWEIFVISRVPRLVSILIAGAALSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILIAILLFPSASMLVKTGIAIAVSFLGTLLFMSILSRLKFKDSIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLAGWLQGDFSLVMAGRYEMLYFSLPALIIAYLFANRFSIVGMGEEFATNLGLNYQQVLYLGLAIVATVSSIIIVSVG
VIPFLGLIVPNLVTLYLGDNLKKILSHTALLGAVFVLFCDILGRLVIFPYEISINAVVGVFGSAIFLILLFKRYQQG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1056512 O1Q79_RS02890 WP_386692865.1 580009..580962(+) (ceuB) [Lonepinella sp. MS14434]
TTGATTAAACGCCGTTACTTATTTTTGTTGGTTATTTTGCTTTCTGTGTTATCACTATTTATCGGGGTTAGCACGGTAAA
TTTGACTGGCTTATTTGCCCTTGACGGTGAACAATGGGAAATTTTTGTTATTAGTCGTGTACCACGTTTGGTCAGTATTT
TGATTGCAGGAGCCGCATTGAGTATTTGCGGTTTAGTTATGCAACAATTGAGTCGTAATCGTTTTGTTTCACCCACTACT
GCAGGTACAATGGATAGTGCCAGATTAGGTATTTTAATTGCTATCTTACTTTTTCCGTCCGCATCAATGTTAGTGAAAAC
AGGAATTGCTATTGCTGTTTCTTTCTTGGGGACATTGCTATTTATGAGCATTCTGTCTCGTCTCAAATTTAAAGACAGTA
TTTTTGTCCCTTTAGTGGGAATTATGTTTGGTAATATTATCAGCTCTATTACGGCATTTATCGCTTATAAAGAAGATCTG
TTACAAAACCTTGCTGGCTGGCTGCAAGGGGATTTTTCATTGGTCATGGCTGGGCGTTATGAGATGCTGTATTTTAGCTT
ACCAGCATTAATTATTGCTTATTTATTTGCAAATCGTTTTTCCATTGTCGGAATGGGCGAAGAGTTTGCCACTAATCTTG
GGTTGAACTATCAACAGGTCCTATATTTAGGGCTCGCTATTGTCGCGACAGTGTCTTCAATTATTATTGTTTCTGTCGGT
GTTATTCCATTTTTAGGTTTGATCGTGCCAAATCTGGTTACCCTTTATTTAGGTGATAATTTGAAAAAGATTTTGTCGCA
TACCGCGTTACTCGGGGCAGTATTTGTGCTGTTTTGTGATATTTTAGGTCGTCTGGTGATTTTTCCTTATGAAATTTCTA
TCAATGCCGTTGTGGGAGTGTTTGGCAGTGCAATATTTCTGATTTTATTATTTAAACGTTATCAACAAGGTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.045

97.476

0.527

Multiple sequence alignment