Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   O1Q81_RS03590 Genome accession   NZ_CP170385
Coordinates   751679..752032 (+) Length   117 a.a.
NCBI ID   WP_386698259.1    Uniprot ID   -
Organism   Lonepinella sp. MS14436     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 746679..757032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q81_RS03560 (O1Q81_00706) hisH 747004..747597 (-) 594 WP_386695762.1 imidazole glycerol phosphate synthase subunit HisH -
  O1Q81_RS03565 (O1Q81_00707) - 747619..748008 (-) 390 WP_386689494.1 type II toxin-antitoxin system VapC family toxin -
  O1Q81_RS03570 (O1Q81_00708) - 748005..748256 (-) 252 WP_386689496.1 antitoxin -
  O1Q81_RS03575 (O1Q81_00709) hisB 748332..749426 (-) 1095 WP_386698257.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -
  O1Q81_RS03580 (O1Q81_00710) dauA 749455..751200 (-) 1746 WP_386689502.1 C4-dicarboxylic acid transporter DauA -
  O1Q81_RS03590 (O1Q81_00712) comE1/comEA 751679..752032 (+) 354 WP_386698259.1 ComEA family DNA-binding protein Machinery gene
  O1Q81_RS03595 (O1Q81_00713) - 752127..752399 (+) 273 WP_386692530.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  O1Q81_RS03600 (O1Q81_00714) purN 752444..753082 (-) 639 WP_386689510.1 phosphoribosylglycinamide formyltransferase -
  O1Q81_RS03605 (O1Q81_00715) purM 753139..754176 (-) 1038 WP_386698260.1 phosphoribosylformylglycinamidine cyclo-ligase -
  O1Q81_RS03610 (O1Q81_00716) - 754335..755690 (-) 1356 WP_386698609.1 sodium-dependent transporter -
  O1Q81_RS03615 (O1Q81_00717) - 755786..756448 (-) 663 WP_386689515.1 YtjB family periplasmic protein -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 12190.88 Da        Isoelectric Point: 7.0098

>NTDB_id=1056491 O1Q81_RS03590 WP_386698259.1 751679..752032(+) (comE1/comEA) [Lonepinella sp. MS14436]
MKSIKALFGTVVLAGSLLGSANVFAETAQPATTAVQQVTAQTVATETQATVVGDKLNINTASATEIQKALTGIGAKKAEA
IVQYRETHGAFTSVDQLLDVQGIGQATLDKNKDRIIF

Nucleotide


Download         Length: 354 bp        

>NTDB_id=1056491 O1Q81_RS03590 WP_386698259.1 751679..752032(+) (comE1/comEA) [Lonepinella sp. MS14436]
ATGAAATCCATTAAAGCATTATTCGGCACAGTGGTACTAGCTGGCTCATTATTAGGCAGTGCAAACGTATTCGCAGAAAC
CGCACAACCAGCCACAACAGCCGTTCAGCAAGTTACTGCACAAACGGTTGCAACTGAAACACAAGCTACTGTAGTTGGTG
ATAAATTAAATATTAACACCGCTTCCGCCACAGAAATTCAAAAAGCCTTAACGGGGATCGGAGCTAAAAAAGCTGAAGCC
ATTGTGCAATATCGTGAAACGCATGGTGCTTTCACTTCCGTAGATCAATTATTAGACGTACAGGGTATTGGTCAAGCTAC
TTTAGATAAAAATAAAGATCGGATTATTTTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

62.281

97.436

0.607
  comEA/comE1 Glaesserella parasuis strain SC1401

53.535

84.615

0.453

Multiple sequence alignment