Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACLV7D_RS05270 Genome accession   NZ_OZ217345
Coordinates   1098273..1099343 (-) Length   356 a.a.
NCBI ID   WP_049491412.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1093273..1104343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS05245 (SMIF22_10260) - 1093514..1094206 (+) 693 WP_218764513.1 YjjG family noncanonical pyrimidine nucleotidase -
  ACLV7D_RS05250 (SMIF22_10270) - 1094268..1094921 (+) 654 WP_218764512.1 uracil-DNA glycosylase -
  ACLV7D_RS05255 (SMIF22_10280) mutX 1094931..1095395 (+) 465 WP_001135768.1 NUDIX hydrolase Machinery gene
  ACLV7D_RS05260 (SMIF22_10290) - 1095408..1096676 (+) 1269 WP_218764511.1 dihydroorotase -
  ACLV7D_RS05265 (SMIF22_10300) - 1096718..1098070 (+) 1353 WP_218764510.1 MATE family efflux transporter -
  ACLV7D_RS05270 (SMIF22_10310) xerS 1098273..1099343 (-) 1071 WP_049491412.1 tyrosine recombinase XerS Machinery gene
  ACLV7D_RS05275 (SMIF22_10320) - 1099872..1101422 (-) 1551 WP_218764509.1 ClC family H(+)/Cl(-) exchange transporter -
  ACLV7D_RS05280 (SMIF22_10330) - 1101438..1102217 (-) 780 WP_218764508.1 ribonuclease HII -
  ACLV7D_RS05285 (SMIF22_10340) ylqF 1102204..1103055 (-) 852 WP_218764507.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41215.28 Da        Isoelectric Point: 9.6031

>NTDB_id=1056237 ACLV7D_RS05270 WP_049491412.1 1098273..1099343(-) (xerS) [Streptococcus mitis isolate S. mitis F22]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1056237 ACLV7D_RS05270 WP_049491412.1 1098273..1099343(-) (xerS) [Streptococcus mitis isolate S. mitis F22]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTTGCTGTTCCCTACAGTTTTACAACCTTATACGAATATCTGAAGGAATACGATCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAATGCTGATAAAATGTCCGATATTCCTTTATCTGTCTTGGAAAATATGTCAAAGAAAGACATGGAA
TCCTTTATCCTTTACCTACGTGAACGTCCTTTGTTGAATGCTAATACAACCAAGCAAGGAGTTTCTCAGACAACCATCAA
TCGGACTTTGTCAGCACTTTCTAGTCTTTACAAGTATCTGACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTTT
ATCGTAATGTAATGAAGAAAGTTTCAACAAAGAAAAAGAAAGAAACGCTTGCTGCCAGAGCTGAAAACATCAAACAAAAG
CTCTTTCTTGGTGATGAAACAGAAGGTTTTCTTACTTATATTGACCAAGAGTACCCACAACAGCTCTCAAATCGTGCCTT
ATCCTCCTTTAATAAAAATAAAGAACGTGATTTGGCCATTATTGCCCTTCTCTTGGCGTCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTGGATCTAAGAGATCTCAATCTCAAGATGATGGTTATTGATGTCACTCGAAAAGGTGGCAAACGTGACTCG
GTCAATGTCGCTGCTTTTGCTAAGCCTTATTTAGAGAATTATCTAGCCATTCGAAATCAACGCTATAAGACGGAAAAGAC
AGACACAGCGCTCTTTCTGACCTTATACCGAGGTGTTCCTAATCGTATCGATGCTTCCAGTGTTGAGAAAATGGTTGCCA
AATACTCTGAAGACTTCAAAGTTCGTGTAACCCCCCACAAACTGCGCCATACCCTAGCAACTAGGCTCTATGATGCTACT
AAATCGCAAGTTTTAGTCAGTCACCAGCTAGGTCACGCCAGTACACAAGTCACTGACCTCTATACCCATATCGTAAATGA
TGAACAAAAGAATGCTTTGGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.157

100

0.992