Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8609_RS03070 Genome accession   NZ_AP028412
Coordinates   592757..593530 (+) Length   257 a.a.
NCBI ID   WP_032584684.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12128     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 587757..598530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8609_RS03055 (I12128_06060) - 588606..590540 (-) 1935 WP_002934608.1 RNB domain-containing ribonuclease -
  R8609_RS03060 (I12128_06070) ilvC 590659..591681 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  R8609_RS03065 (I12128_06080) - 591685..592767 (+) 1083 WP_002934609.1 divergent polysaccharide deacetylase family protein -
  R8609_RS03070 (I12128_06090) dprA 592757..593530 (+) 774 WP_032584684.1 DNA-processing protein DprA Machinery gene
  R8609_RS03075 (I12128_06100) ruvX 593527..593910 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8609_RS03080 (I12128_06110) - 593939..594778 (+) 840 WP_074484747.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8609_RS03085 (I12128_06120) msrA 594954..595451 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8609_RS03090 (I12128_06130) ppa 595493..596011 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8609_RS03095 (I12128_06140) adk 596021..596599 (-) 579 WP_002859580.1 adenylate kinase -
  R8609_RS03100 (I12128_06150) aspS 596596..598347 (-) 1752 WP_032584680.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28776.59 Da        Isoelectric Point: 7.6510

>NTDB_id=105620 R8609_RS03070 WP_032584684.1 592757..593530(+) (dprA) [Campylobacter jejuni strain IDH-12128]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYGNALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=105620 R8609_RS03070 WP_032584684.1 592757..593530(+) (dprA) [Campylobacter jejuni strain IDH-12128]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGGAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment