Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ACFDA3_RS08490 Genome accession   NZ_CP170251
Coordinates   1831307..1831882 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS08     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1826307..1836882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA3_RS08440 (ACFDA3_08435) - 1826450..1826665 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  ACFDA3_RS08445 (ACFDA3_08440) - 1826768..1826884 (+) 117 WP_353956201.1 SAR1012 family small protein -
  ACFDA3_RS08450 (ACFDA3_08445) - 1827318..1827476 (+) 159 WP_002446129.1 replication/maintenance protein RepL -
  ACFDA3_RS08455 (ACFDA3_08450) - 1827546..1828163 (-) 618 WP_381410182.1 LysE/ArgO family amino acid transporter -
  ACFDA3_RS08460 (ACFDA3_08455) - 1828167..1829114 (-) 948 WP_193620973.1 fatty acid desaturase -
  ACFDA3_RS08465 (ACFDA3_08460) - 1829339..1829560 (-) 222 WP_002446125.1 hypothetical protein -
  ACFDA3_RS08470 (ACFDA3_08465) - 1829581..1829697 (-) 117 WP_002458042.1 hypothetical protein -
  ACFDA3_RS08475 (ACFDA3_08470) mobV 1829779..1830237 (-) 459 Protein_1637 MobV family relaxase -
  ACFDA3_RS08490 (ACFDA3_08485) comK/comK1 1831307..1831882 (-) 576 WP_001829272.1 competence protein ComK Regulator
  ACFDA3_RS08495 (ACFDA3_08490) - 1832097..1832315 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  ACFDA3_RS08500 (ACFDA3_08495) - 1832393..1833379 (-) 987 WP_115358816.1 lipoate--protein ligase -
  ACFDA3_RS08505 (ACFDA3_08500) - 1833584..1833769 (+) 186 WP_001829339.1 DUF2187 family protein -
  ACFDA3_RS08510 (ACFDA3_08505) - 1833775..1834377 (+) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  ACFDA3_RS08515 (ACFDA3_08510) - 1834480..1835985 (-) 1506 WP_002487196.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=1056080 ACFDA3_RS08490 WP_001829272.1 1831307..1831882(-) (comK/comK1) [Staphylococcus epidermidis strain PS08]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1056080 ACFDA3_RS08490 WP_001829272.1 1831307..1831882(-) (comK/comK1) [Staphylococcus epidermidis strain PS08]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGAAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCTATTGACTATAATCAGTCCTCCTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743

Multiple sequence alignment