Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8953_RS06080 Genome accession   NZ_AP028409
Coordinates   1179844..1180614 (-) Length   256 a.a.
NCBI ID   WP_004284970.1    Uniprot ID   -
Organism   Campylobacter coli strain IDH-11999     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1174844..1185614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8953_RS06050 (I11999_11900) aspS 1174980..1176731 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  R8953_RS06055 (I11999_11910) - 1176728..1177303 (+) 576 WP_002776379.1 adenylate kinase -
  R8953_RS06060 (I11999_11920) ppa 1177313..1177831 (+) 519 WP_002776378.1 inorganic diphosphatase -
  R8953_RS06065 (I11999_11930) msrA 1177879..1178379 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8953_RS06070 (I11999_11940) - 1178602..1179456 (-) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8953_RS06075 (I11999_11950) ruvX 1179467..1179847 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  R8953_RS06080 (I11999_11960) dprA 1179844..1180614 (-) 771 WP_004284970.1 DNA-processing protein DprA Machinery gene
  R8953_RS06085 (I11999_11970) - 1180604..1181635 (-) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  R8953_RS06090 (I11999_11980) ilvC 1181638..1182660 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  R8953_RS06095 (I11999_11990) - 1182783..1184717 (+) 1935 WP_002781664.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28943.38 Da        Isoelectric Point: 5.2618

>NTDB_id=105608 R8953_RS06080 WP_004284970.1 1179844..1180614(-) (dprA) [Campylobacter coli strain IDH-11999]
MQSEIPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYREKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=105608 R8953_RS06080 WP_004284970.1 1179844..1180614(-) (dprA) [Campylobacter coli strain IDH-11999]
ATGCAAAGTGAAATACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATTAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATAGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.177

96.875

0.457

Multiple sequence alignment