Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACFDA3_RS03685 | Genome accession | NZ_CP170251 |
| Coordinates | 813969..814364 (+) | Length | 131 a.a. |
| NCBI ID | WP_002447777.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain PS08 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 808969..819364
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDA3_RS03660 (ACFDA3_03660) | - | 810388..810792 (+) | 405 | WP_381410491.1 | F0F1 ATP synthase subunit epsilon | - |
| ACFDA3_RS03665 (ACFDA3_03665) | - | 810941..811174 (+) | 234 | WP_381410492.1 | DUF1146 family protein | - |
| ACFDA3_RS03670 (ACFDA3_03670) | murA | 811284..812549 (+) | 1266 | WP_381410493.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ACFDA3_RS03675 (ACFDA3_03675) | fabZ | 812583..813020 (+) | 438 | WP_001829953.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ACFDA3_RS03680 (ACFDA3_03680) | - | 813338..813778 (-) | 441 | WP_002458706.1 | YwpF-like family protein | - |
| ACFDA3_RS03685 (ACFDA3_03685) | ssb | 813969..814364 (+) | 396 | WP_002447777.1 | single-stranded DNA-binding protein | Machinery gene |
| ACFDA3_RS03690 (ACFDA3_03690) | - | 814752..815411 (+) | 660 | WP_002447776.1 | transglycosylase family protein | - |
| ACFDA3_RS03695 (ACFDA3_03695) | tenA | 815695..816384 (+) | 690 | WP_002491179.1 | thiaminase II | - |
| ACFDA3_RS03700 (ACFDA3_03700) | thiD | 816377..817198 (+) | 822 | WP_002458705.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACFDA3_RS03705 (ACFDA3_03705) | thiM | 817191..817979 (+) | 789 | WP_381410494.1 | hydroxyethylthiazole kinase | - |
| ACFDA3_RS03710 (ACFDA3_03710) | thiE | 817985..818623 (+) | 639 | WP_002458704.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15144.99 Da Isoelectric Point: 5.2661
>NTDB_id=1056061 ACFDA3_RS03685 WP_002447777.1 813969..814364(+) (ssb) [Staphylococcus epidermidis strain PS08]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=1056061 ACFDA3_RS03685 WP_002447777.1 813969..814364(+) (ssb) [Staphylococcus epidermidis strain PS08]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCCAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCCAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |