Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACFDBA_RS10655 Genome accession   NZ_CP170250
Coordinates   2243858..2245231 (-) Length   457 a.a.
NCBI ID   WP_002458651.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2238858..2250231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBA_RS10640 (ACFDBA_10635) cysE 2239843..2240472 (-) 630 WP_002438669.1 serine O-acetyltransferase -
  ACFDBA_RS10645 (ACFDBA_10640) gltX 2240881..2242335 (-) 1455 WP_381413833.1 glutamate--tRNA ligase -
  ACFDBA_RS10650 (ACFDBA_10645) - 2242746..2243804 (-) 1059 WP_002491417.1 PIN/TRAM domain-containing protein -
  ACFDBA_RS10655 (ACFDBA_10650) radA 2243858..2245231 (-) 1374 WP_002458651.1 DNA repair protein RadA Machinery gene
  ACFDBA_RS10660 (ACFDBA_10655) - 2245938..2248391 (-) 2454 WP_002458652.1 ATP-dependent Clp protease ATP-binding subunit -
  ACFDBA_RS10665 (ACFDBA_10660) - 2248405..2249412 (-) 1008 WP_381413835.1 protein arginine kinase -
  ACFDBA_RS10670 (ACFDBA_10665) - 2249402..2249965 (-) 564 WP_002491465.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50242.84 Da        Isoelectric Point: 7.5278

>NTDB_id=1056051 ACFDBA_RS10655 WP_002458651.1 2243858..2245231(-) (radA) [Staphylococcus epidermidis strain PS21]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKVAHPKHGVKTKETAGKVQKLNSVKHEATPRLLTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQTVK
EERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDQAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVVGVSSVHEALKYALHSKPR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1056051 ACFDBA_RS10655 WP_002458651.1 2243858..2245231(-) (radA) [Staphylococcus epidermidis strain PS21]
ATGGCCAAGAAAAAAGTAATATTCGAATGTATGGCATGTGGCTATCAATCTCCTAAGTGGATGGGTAAGTGCCCTAACTG
CGGCGCGTGGAATCAAATGGAAGAAATAGTAGAAAAGGTTGCTCATCCTAAACATGGTGTAAAAACAAAAGAAACAGCAG
GTAAGGTACAAAAGTTAAATAGTGTTAAGCATGAAGCTACCCCTAGACTACTTACAGAATCAAAGGAATTTAACCGCGTT
TTAGGTGGAGGTATTGTAAGTGGTTCATTAGTACTAATAGGTGGAGACCCAGGTATTGGTAAGTCGACTTTATTGCTACA
AATTTGTGCTGCGCTGTCACAAAATAAGAATGTTTTATATATTACTGGTGAGGAATCTATTAATCAAACTAAGTTGCGCG
CTGATCGTTTGGAAGAAGATTCTAGTCATCTTAATGTTTTAGCCGAAACTGATTTAGAAGTGATACATCAAACTGTAAAA
GAAGAGAGACCTGACTTACTTGTTGTTGATTCGATTCAAACAATCTATCATCCGGAAATTAGTTCTGCACCTGGATCGGT
ATCACAAGTAAGAGAGAGTACACAGAGTTTAATGAACATTGCTAAACAGATGAATATTGCCACATTTATTGTGGGACACG
TAACAAAAGAAGGACAAATCGCCGGACCAAGATTATTGGAACATATGGTTGATACAGTTCTTTATTTTGAAGGAGACGAG
CATCACGCTTATCGTATCCTTAGAGCAGTAAAAAATAGATTTGGTTCTACAAATGAGATGGGGATTTTCGAAATGAAGCA
AAGTGGATTAAAAGGTGTACTTAATCCTTCTGAAATGTTTTTAGAGGAACGTTCTACAAATGTTCCGGGCTCTACAATCG
TCCCCACTATGGAAGGAACAAGACCACTACTCATTGAAGTCCAAGCGCTTGTTACACCAACTACATTTAATAATCCTAGA
CGAATGGCTACAGGTATAGATCATAATCGATTAAGTTTACTTATGGCGGTTCTAGAAAAAAAGGAAAACTATTTACTCCA
ACAACAAGATGCCTATATTAAAGTAGCAGGTGGCGTCAAATTAACAGAACCTGCTGTTGATTTAAGTATTATTGTTGCGA
CAGCATCAAGTTTTAAAGATCAAGCTGTTGATGGATTAGATTGTTTTGTGGGTGAAGTTGGATTAACAGGTGAAGTACGC
AGAGTATCTCGCATAGAGCAACGTGTTCAAGAAGCGGCCAAACTAGGGTTTAAAAGAGCTATTATTCCACAGACAAATAT
TGGAGGTTGGACATTCCCAGAAGGCATCCAAGTCGTTGGTGTTTCATCAGTACATGAAGCTTTAAAATATGCATTACATT
CAAAACCGAGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.231

100

0.665
  radA Streptococcus pneumoniae Rx1

60.802

98.249

0.597
  radA Streptococcus pneumoniae D39

60.802

98.249

0.597
  radA Streptococcus pneumoniae R6

60.802

98.249

0.597
  radA Streptococcus pneumoniae TIGR4

60.802

98.249

0.597
  radA Streptococcus mitis NCTC 12261

60.802

98.249

0.597
  radA Streptococcus mitis SK321

60.802

98.249

0.597

Multiple sequence alignment