Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ACFDBA_RS08630 Genome accession   NZ_CP170250
Coordinates   1826867..1827442 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS21     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821867..1832442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBA_RS08590 (ACFDBA_08585) - 1822322..1823260 (+) 939 WP_381413659.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ACFDBA_RS08595 (ACFDBA_08590) - 1823674..1824231 (-) 558 WP_002458045.1 GNAT family N-acetyltransferase -
  ACFDBA_RS08600 (ACFDBA_08595) - 1824461..1824676 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  ACFDBA_RS08605 (ACFDBA_08600) - 1824780..1824896 (+) 117 WP_002486587.1 SAR1012 family small protein -
  ACFDBA_RS08610 (ACFDBA_08605) - 1825219..1825749 (+) 531 WP_002475755.1 GNAT family N-acetyltransferase -
  ACFDBA_RS08615 (ACFDBA_08610) - 1825985..1826180 (+) 196 Protein_1664 hypothetical protein -
  ACFDBA_RS08630 (ACFDBA_08625) comK/comK1 1826867..1827442 (-) 576 WP_001829272.1 competence protein ComK Regulator
  ACFDBA_RS08635 (ACFDBA_08630) - 1827657..1827875 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  ACFDBA_RS08640 (ACFDBA_08635) - 1827953..1828939 (-) 987 WP_381413662.1 lipoate--protein ligase -
  ACFDBA_RS08645 (ACFDBA_08640) - 1829144..1829329 (+) 186 WP_001829339.1 DUF2187 family protein -
  ACFDBA_RS08650 (ACFDBA_08645) - 1829335..1829937 (+) 603 WP_381413664.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  ACFDBA_RS08655 (ACFDBA_08650) - 1830040..1831545 (-) 1506 Protein_1670 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=1056048 ACFDBA_RS08630 WP_001829272.1 1826867..1827442(-) (comK/comK1) [Staphylococcus epidermidis strain PS21]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1056048 ACFDBA_RS08630 WP_001829272.1 1826867..1827442(-) (comK/comK1) [Staphylococcus epidermidis strain PS21]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743

Multiple sequence alignment