Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFDBA_RS07685 Genome accession   NZ_CP170250
Coordinates   1624942..1625814 (-) Length   290 a.a.
NCBI ID   WP_381413586.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS21     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1619942..1630814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBA_RS07670 (ACFDBA_07665) xerC 1620244..1621104 (-) 861 WP_381414634.1 tyrosine recombinase XerC -
  ACFDBA_RS07675 (ACFDBA_07670) trmFO 1621358..1622665 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACFDBA_RS07680 (ACFDBA_07675) topA 1622690..1624759 (-) 2070 WP_002446285.1 type I DNA topoisomerase -
  ACFDBA_RS07685 (ACFDBA_07680) dprA 1624942..1625814 (-) 873 WP_381413586.1 DNA-processing protein DprA Machinery gene
  ACFDBA_RS07690 (ACFDBA_07685) - 1626138..1626238 (-) 101 Protein_1480 IS200/IS605 family transposase -
  ACFDBA_RS07695 (ACFDBA_07690) - 1626296..1626407 (-) 112 Protein_1481 IS200/IS605 family transposase -
  ACFDBA_RS07700 (ACFDBA_07695) sucD 1626604..1627512 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  ACFDBA_RS07705 (ACFDBA_07700) sucC 1627534..1628700 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFDBA_RS07710 (ACFDBA_07705) - 1628808..1629578 (-) 771 WP_046044077.1 ribonuclease HII -
  ACFDBA_RS07715 (ACFDBA_07710) ylqF 1629583..1630446 (-) 864 WP_381413588.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33958.05 Da        Isoelectric Point: 9.8283

>NTDB_id=1056047 ACFDBA_RS07685 WP_381413586.1 1624942..1625814(-) (dprA) [Staphylococcus epidermidis strain PS21]
MIQHTMLKLYWANFTTAQLHHLTRKYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSRLARGADSVAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1056047 ACFDBA_RS07685 WP_381413586.1 1624942..1625814(-) (dprA) [Staphylococcus epidermidis strain PS21]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTAAATATCC
CGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGATGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTAGATTAGCGCGTGGCGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCCATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGGGTTCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTACGAAGAATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.292

99.31

0.569
  dprA Staphylococcus aureus N315

57.292

99.31

0.569

Multiple sequence alignment