Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | R8953_RS03665 | Genome accession | NZ_AP028409 |
| Coordinates | 731017..731322 (-) | Length | 101 a.a. |
| NCBI ID | WP_052774028.1 | Uniprot ID | A0A6C7TAM1 |
| Organism | Campylobacter coli strain IDH-11999 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 726017..736322
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8953_RS03630 (I11999_07200) | - | 726432..727193 (+) | 762 | WP_025431509.1 | ATP-binding protein | - |
| R8953_RS03635 (I11999_07210) | - | 727190..727873 (+) | 684 | WP_002791740.1 | 3-methyladenine DNA glycosylase | - |
| R8953_RS03640 (I11999_07220) | thiD | 727873..728685 (+) | 813 | WP_002797568.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| R8953_RS03645 (I11999_07230) | thiE | 728675..729307 (+) | 633 | WP_002777120.1 | thiamine phosphate synthase | - |
| R8953_RS03650 (I11999_07240) | - | 729285..729914 (+) | 630 | WP_052774030.1 | uroporphyrinogen-III synthase | - |
| R8953_RS03655 (I11999_07250) | - | 729907..730359 (-) | 453 | WP_002777117.1 | hypothetical protein | - |
| R8953_RS03660 (I11999_07260) | - | 730356..731024 (-) | 669 | WP_052774029.1 | hypothetical protein | - |
| R8953_RS03665 (I11999_07270) | ctsT | 731017..731322 (-) | 306 | WP_052774028.1 | hypothetical protein | Machinery gene |
| R8953_RS03670 (I11999_07280) | proC | 731319..732056 (-) | 738 | WP_002780246.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| R8953_RS03675 (I11999_07290) | fliW | 732056..732445 (-) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| R8953_RS03680 (I11999_07300) | - | 732609..733256 (+) | 648 | WP_002780248.1 | outer membrane protein assembly factor BamD | - |
| R8953_RS03685 (I11999_07310) | lon | 733272..735647 (+) | 2376 | WP_002783351.1 | endopeptidase La | - |
| R8953_RS03690 (I11999_07320) | rpsR | 735704..735964 (-) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12430.26 Da Isoelectric Point: 6.0617
>NTDB_id=105603 R8953_RS03665 WP_052774028.1 731017..731322(-) (ctsT) [Campylobacter coli strain IDH-11999]
MKVAFSLLEFILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLEFILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=105603 R8953_RS03665 WP_052774028.1 731017..731322(-) (ctsT) [Campylobacter coli strain IDH-11999]
ATGAAAGTTGCATTCTCGCTTTTAGAATTTATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTTATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |