Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFDBA_RS04060 Genome accession   NZ_CP170250
Coordinates   851369..851764 (+) Length   131 a.a.
NCBI ID   WP_002447777.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 846369..856764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBA_RS04035 (ACFDBA_04035) - 847789..848193 (+) 405 WP_002491183.1 F0F1 ATP synthase subunit epsilon -
  ACFDBA_RS04040 (ACFDBA_04040) - 848341..848574 (+) 234 WP_002495678.1 DUF1146 family protein -
  ACFDBA_RS04045 (ACFDBA_04045) murA 848684..849949 (+) 1266 WP_002458708.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFDBA_RS04050 (ACFDBA_04050) fabZ 849983..850420 (+) 438 WP_002447779.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACFDBA_RS04055 (ACFDBA_04055) - 850738..851178 (-) 441 WP_162186691.1 YwpF-like family protein -
  ACFDBA_RS04060 (ACFDBA_04060) ssb 851369..851764 (+) 396 WP_002447777.1 single-stranded DNA-binding protein Machinery gene
  ACFDBA_RS04065 (ACFDBA_04065) - 852152..852811 (+) 660 WP_002447776.1 transglycosylase family protein -
  ACFDBA_RS04070 (ACFDBA_04070) tenA 853095..853775 (+) 681 WP_162186692.1 thiaminase II -
  ACFDBA_RS04075 (ACFDBA_04075) thiD 853778..854599 (+) 822 WP_162186693.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACFDBA_RS04080 (ACFDBA_04080) thiM 854592..855380 (+) 789 WP_162186694.1 hydroxyethylthiazole kinase -
  ACFDBA_RS04085 (ACFDBA_04085) thiE 855386..856024 (+) 639 WP_002458704.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15144.99 Da        Isoelectric Point: 5.2661

>NTDB_id=1056029 ACFDBA_RS04060 WP_002447777.1 851369..851764(+) (ssb) [Staphylococcus epidermidis strain PS21]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1056029 ACFDBA_RS04060 WP_002447777.1 851369..851764(+) (ssb) [Staphylococcus epidermidis strain PS21]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCCAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733

Multiple sequence alignment