Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   ACFDBA_RS01360 Genome accession   NZ_CP170250
Coordinates   313424..314320 (+) Length   298 a.a.
NCBI ID   WP_002490847.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS21     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 308424..319320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBA_RS01340 (ACFDBA_01340) - 309111..310655 (+) 1545 WP_161386757.1 NAD(P)H-binding protein -
  ACFDBA_RS01345 (ACFDBA_01345) - 310778..312247 (-) 1470 WP_381414045.1 alkaline phosphatase -
  ACFDBA_RS01350 (ACFDBA_01350) - 312543..312692 (+) 150 WP_002490882.1 hypothetical protein -
  ACFDBA_RS01355 (ACFDBA_01355) braR 312753..313418 (+) 666 WP_002486903.1 response regulator transcription factor Regulator
  ACFDBA_RS01360 (ACFDBA_01360) braS 313424..314320 (+) 897 WP_002490847.1 HAMP domain-containing sensor histidine kinase Regulator
  ACFDBA_RS01365 (ACFDBA_01365) - 314431..315180 (+) 750 WP_002490898.1 ABC transporter ATP-binding protein -
  ACFDBA_RS01370 (ACFDBA_01370) - 315182..317194 (+) 2013 WP_381414047.1 FtsX-like permease family protein -
  ACFDBA_RS01375 (ACFDBA_01375) - 317298..317888 (+) 591 WP_381414049.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34972.64 Da        Isoelectric Point: 6.7015

>NTDB_id=1056025 ACFDBA_RS01360 WP_002490847.1 313424..314320(+) (braS) [Staphylococcus epidermidis strain PS21]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYILAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEYELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDTQWASIMIEQLLNNALKYAKGKDIWIDFDVVNQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNQGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=1056025 ACFDBA_RS01360 WP_002490847.1 313424..314320(+) (braS) [Staphylococcus epidermidis strain PS21]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTATTTTCTTTACCATTTGATGCATACATACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAACGAACATCTTAAAGATAAAGTGGCATATTTAGAATATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAATGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATTACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTACA
CAAGCCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
CATTTTAACCGATACACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATATGGATAGATTTTGATGTTGTCAATCAAACTTTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTTTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTGAATCAGGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597

Multiple sequence alignment