Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   ACFDBA_RS01355 Genome accession   NZ_CP170250
Coordinates   312753..313418 (+) Length   221 a.a.
NCBI ID   WP_002486903.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS21     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 307753..318418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBA_RS01340 (ACFDBA_01340) - 309111..310655 (+) 1545 WP_161386757.1 NAD(P)H-binding protein -
  ACFDBA_RS01345 (ACFDBA_01345) - 310778..312247 (-) 1470 WP_381414045.1 alkaline phosphatase -
  ACFDBA_RS01350 (ACFDBA_01350) - 312543..312692 (+) 150 WP_002490882.1 hypothetical protein -
  ACFDBA_RS01355 (ACFDBA_01355) braR 312753..313418 (+) 666 WP_002486903.1 response regulator transcription factor Regulator
  ACFDBA_RS01360 (ACFDBA_01360) braS 313424..314320 (+) 897 WP_002490847.1 HAMP domain-containing sensor histidine kinase Regulator
  ACFDBA_RS01365 (ACFDBA_01365) - 314431..315180 (+) 750 WP_002490898.1 ABC transporter ATP-binding protein -
  ACFDBA_RS01370 (ACFDBA_01370) - 315182..317194 (+) 2013 WP_381414047.1 FtsX-like permease family protein -
  ACFDBA_RS01375 (ACFDBA_01375) - 317298..317888 (+) 591 WP_381414049.1 DUF4064 domain-containing protein -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 25610.69 Da        Isoelectric Point: 5.1832

>NTDB_id=1056024 ACFDBA_RS01355 WP_002486903.1 312753..313418(+) (braR) [Staphylococcus epidermidis strain PS21]
MKIFIVEDDLVIAESLANELSKWNYEVHVVDNFEKIMEDFRRVEPQLVLLDINLPTLNGFHWCQEIRKVSHVPIMFISSR
TDNMDQILAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSIARDEIAVKGCKLIVDEAKLSKDNEHVQLSLTELQILK
LLFQNENKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDNLIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1056024 ACFDBA_RS01355 WP_002486903.1 312753..313418(+) (braR) [Staphylococcus epidermidis strain PS21]
ATGAAGATTTTCATTGTAGAAGACGATTTAGTGATTGCTGAAAGTTTAGCTAATGAGCTATCTAAATGGAATTATGAGGT
TCATGTGGTTGACAATTTTGAAAAGATAATGGAAGATTTTCGCAGAGTAGAACCACAACTCGTATTATTAGATATCAATC
TACCAACACTTAATGGCTTCCATTGGTGCCAAGAAATACGAAAAGTATCTCATGTGCCTATTATGTTTATTAGTTCAAGA
ACAGATAATATGGATCAAATTCTGGCTATCCAAATGGGTGGCGATGATTTTATCGAGAAACCATTTAACTTGTCTTTAAC
AGTAGCTAAAATTCAGGCACTATTGCGTCGCACTTATGATTTATCTATAGCTCGTGATGAAATAGCTGTTAAAGGTTGTA
AACTAATTGTTGATGAGGCGAAGCTTAGCAAGGATAATGAACATGTTCAACTTTCCTTAACAGAGCTACAGATATTAAAA
TTGTTATTTCAAAATGAAAATAAGTATGTAAGTCGTACAGCTTTAATTGAGAAATGTTGGGAGTCTGAGAATTTTATTGA
TGACAATACGCTAGCAGTAAATATGACGAGATTACGAAAAAAATTACTTTCTATCGGTGTCGATAATTTAATTGAGACAA
AGAAAAATGTAGGATACAGGGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.186

100

0.792


Multiple sequence alignment