Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFDBD_RS07615 Genome accession   NZ_CP170249
Coordinates   1638557..1639432 (-) Length   291 a.a.
NCBI ID   WP_002489942.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain HS01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1633557..1644432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBD_RS07600 (ACFDBD_07595) xerC 1633862..1634722 (-) 861 WP_002446287.1 tyrosine recombinase XerC -
  ACFDBD_RS07605 (ACFDBD_07600) trmFO 1634976..1636283 (-) 1308 WP_002489920.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACFDBD_RS07610 (ACFDBD_07605) topA 1636308..1638377 (-) 2070 WP_002446285.1 type I DNA topoisomerase -
  ACFDBD_RS07615 (ACFDBD_07610) dprA 1638557..1639432 (-) 876 WP_002489942.1 DNA-processing protein DprA Machinery gene
  ACFDBD_RS07620 (ACFDBD_07615) - 1639757..1639857 (-) 101 Protein_1465 IS200/IS605 family transposase -
  ACFDBD_RS07625 (ACFDBD_07620) - 1639915..1640026 (-) 112 Protein_1466 IS200/IS605 family transposase -
  ACFDBD_RS07630 (ACFDBD_07625) sucD 1640222..1641130 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  ACFDBD_RS07635 (ACFDBD_07630) sucC 1641152..1642318 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFDBD_RS07640 (ACFDBD_07635) - 1642426..1643196 (-) 771 WP_002489955.1 ribonuclease HII -
  ACFDBD_RS07645 (ACFDBD_07640) ylqF 1643201..1644064 (-) 864 WP_002489931.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33946.06 Da        Isoelectric Point: 9.8354

>NTDB_id=1056014 ACFDBD_RS07615 WP_002489942.1 1638557..1639432(-) (dprA) [Staphylococcus epidermidis strain HS01]
MIQHTMLKLYWANFTTAQLHHLTRKYPGFLSENVFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCREMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNASQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLFM

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1056014 ACFDBD_RS07615 WP_002489942.1 1638557..1639432(-) (dprA) [Staphylococcus epidermidis strain HS01]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTAAATATCC
CGGCTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAGAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCATTAGCTGTTATTGGCTCACGTAATGCCTCACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCATCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGGTTAGTGATAAGTGAATATCCACCATTTTCTCCCATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGGGTTCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTATGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

56.944

98.969

0.564
  dprA Staphylococcus aureus N315

56.944

98.969

0.564

Multiple sequence alignment