Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACFDBD_RS03905 | Genome accession | NZ_CP170249 |
| Coordinates | 849932..850327 (+) | Length | 131 a.a. |
| NCBI ID | WP_002447777.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain HS01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 844932..855327
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDBD_RS03880 (ACFDBD_03880) | - | 846348..846752 (+) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
| ACFDBD_RS03885 (ACFDBD_03885) | - | 846901..847134 (+) | 234 | WP_002495678.1 | DUF1146 family protein | - |
| ACFDBD_RS03890 (ACFDBD_03890) | murA | 847244..848509 (+) | 1266 | WP_002458708.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ACFDBD_RS03895 (ACFDBD_03895) | fabZ | 848546..848983 (+) | 438 | WP_002458707.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ACFDBD_RS03900 (ACFDBD_03900) | - | 849301..849741 (-) | 441 | WP_002458706.1 | YwpF-like family protein | - |
| ACFDBD_RS03905 (ACFDBD_03905) | ssb | 849932..850327 (+) | 396 | WP_002447777.1 | single-stranded DNA-binding protein | Machinery gene |
| ACFDBD_RS03910 (ACFDBD_03910) | - | 850715..851374 (+) | 660 | WP_002447776.1 | transglycosylase family protein | - |
| ACFDBD_RS03915 (ACFDBD_03915) | tenA | 851658..852347 (+) | 690 | WP_002447775.1 | thiaminase II | - |
| ACFDBD_RS03920 (ACFDBD_03920) | thiD | 852340..853161 (+) | 822 | WP_002458705.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACFDBD_RS03925 (ACFDBD_03925) | thiM | 853154..853942 (+) | 789 | WP_020363517.1 | hydroxyethylthiazole kinase | - |
| ACFDBD_RS03930 (ACFDBD_03930) | thiE | 853948..854586 (+) | 639 | WP_002458704.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15144.99 Da Isoelectric Point: 5.2661
>NTDB_id=1055996 ACFDBD_RS03905 WP_002447777.1 849932..850327(+) (ssb) [Staphylococcus epidermidis strain HS01]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=1055996 ACFDBD_RS03905 WP_002447777.1 849932..850327(+) (ssb) [Staphylococcus epidermidis strain HS01]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |