Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ACFDA8_RS08330 Genome accession   NZ_CP170248
Coordinates   1789584..1790138 (-) Length   184 a.a.
NCBI ID   WP_381404633.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS25     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1784584..1795138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA8_RS08290 (ACFDA8_08285) - 1785047..1785985 (+) 939 WP_162186372.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ACFDA8_RS08295 (ACFDA8_08290) - 1786339..1786896 (-) 558 WP_002458045.1 GNAT family N-acetyltransferase -
  ACFDA8_RS08300 (ACFDA8_08295) - 1787126..1787341 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  ACFDA8_RS08305 (ACFDA8_08300) - 1787445..1787561 (+) 117 WP_002486587.1 SAR1012 family small protein -
  ACFDA8_RS08310 (ACFDA8_08305) - 1787884..1788414 (+) 531 WP_002486582.1 GNAT family N-acetyltransferase -
  ACFDA8_RS08315 (ACFDA8_08310) - 1788650..1788844 (+) 195 Protein_1603 hypothetical protein -
  ACFDA8_RS08330 (ACFDA8_08325) comK/comK1 1789584..1790138 (-) 555 WP_381404633.1 competence protein ComK Regulator
  ACFDA8_RS08335 (ACFDA8_08330) - 1790374..1790592 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  ACFDA8_RS08340 (ACFDA8_08335) - 1790670..1791656 (-) 987 WP_002446122.1 lipoate--protein ligase -
  ACFDA8_RS08345 (ACFDA8_08340) - 1791861..1792046 (+) 186 WP_001829339.1 DUF2187 family protein -
  ACFDA8_RS08350 (ACFDA8_08345) - 1792052..1792654 (+) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  ACFDA8_RS08355 (ACFDA8_08350) - 1792756..1794261 (-) 1506 WP_002491638.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 21990.97 Da        Isoelectric Point: 9.4710

>NTDB_id=1055980 ACFDA8_RS08330 WP_381404633.1 1789584..1790138(-) (comK/comK1) [Staphylococcus epidermidis strain PS25]
MYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPPILLTPLF
PTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRMKSNNPEQ
PIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1055980 ACFDA8_RS08330 WP_381404633.1 1789584..1790138(-) (comK/comK1) [Staphylococcus epidermidis strain PS25]
ATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCAGACAAATGGTACTGAGATTAT
CAGATTTGATCAAACCCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGATCATGTAAGTTTTATGGCAATA
ATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCTATTTTACTTACACCTCTTTTT
CCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATATGCATTATATTGAAAATGTTAA
AGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCAATGTATCATTTCATAGTTTGT
GGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATGAAATCTAACAACCCTGAACAA
CCCATTGACTATAATCAGTCCTCTTTAAATATTTTCGAGGCGCTTTCACGTTACTCTCTTTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

77.049

99.457

0.766
  comK/comK1 Staphylococcus aureus N315

77.049

99.457

0.766

Multiple sequence alignment