Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFDA8_RS07385 Genome accession   NZ_CP170248
Coordinates   1587733..1588605 (-) Length   290 a.a.
NCBI ID   WP_381402775.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS25     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1582733..1593605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA8_RS07370 (ACFDA8_07365) xerC 1583035..1583895 (-) 861 WP_371093967.1 tyrosine recombinase XerC -
  ACFDA8_RS07375 (ACFDA8_07370) trmFO 1584149..1585456 (-) 1308 WP_002491408.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACFDA8_RS07380 (ACFDA8_07375) topA 1585481..1587550 (-) 2070 WP_381402773.1 type I DNA topoisomerase -
  ACFDA8_RS07385 (ACFDA8_07380) dprA 1587733..1588605 (-) 873 WP_381402775.1 DNA-processing protein DprA Machinery gene
  ACFDA8_RS07390 (ACFDA8_07385) - 1588929..1589029 (-) 101 Protein_1419 IS200/IS605 family transposase -
  ACFDA8_RS07395 (ACFDA8_07390) - 1589087..1589198 (-) 112 Protein_1420 IS200/IS605 family transposase -
  ACFDA8_RS07400 (ACFDA8_07395) sucD 1589395..1590303 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  ACFDA8_RS07405 (ACFDA8_07400) sucC 1590325..1591491 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFDA8_RS07410 (ACFDA8_07405) - 1591599..1592369 (-) 771 WP_002489955.1 ribonuclease HII -
  ACFDA8_RS07415 (ACFDA8_07410) ylqF 1592374..1593237 (-) 864 WP_002491374.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33906.96 Da        Isoelectric Point: 9.7522

>NTDB_id=1055979 ACFDA8_RS07385 WP_381402775.1 1587733..1588605(-) (dprA) [Staphylococcus epidermidis strain PS25]
MIQHTMLKLYWANFTTAQLHHLTRKYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIISGLARGADSVAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVFITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1055979 ACFDA8_RS07385 WP_381402775.1 1587733..1588605(-) (dprA) [Staphylococcus epidermidis strain PS25]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTAAATATCC
CGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGATGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTATTTCTGGATTAGCGCGTGGCGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGGGTTTTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

56.944

99.31

0.566
  dprA Staphylococcus aureus N315

56.944

99.31

0.566

Multiple sequence alignment