Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACFDA8_RS03755 | Genome accession | NZ_CP170248 |
| Coordinates | 817370..817765 (+) | Length | 131 a.a. |
| NCBI ID | WP_002447777.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain PS25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 812370..822765
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDA8_RS03730 (ACFDA8_03730) | - | 813789..814193 (+) | 405 | WP_002491183.1 | F0F1 ATP synthase subunit epsilon | - |
| ACFDA8_RS03735 (ACFDA8_03735) | - | 814342..814575 (+) | 234 | WP_002495678.1 | DUF1146 family protein | - |
| ACFDA8_RS03740 (ACFDA8_03740) | murA | 814685..815950 (+) | 1266 | WP_381404277.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ACFDA8_RS03745 (ACFDA8_03745) | fabZ | 815984..816421 (+) | 438 | WP_002447779.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ACFDA8_RS03750 (ACFDA8_03750) | - | 816739..817179 (-) | 441 | WP_002458706.1 | YwpF-like family protein | - |
| ACFDA8_RS03755 (ACFDA8_03755) | ssb | 817370..817765 (+) | 396 | WP_002447777.1 | single-stranded DNA-binding protein | Machinery gene |
| ACFDA8_RS03760 (ACFDA8_03760) | - | 818153..818812 (+) | 660 | WP_002447776.1 | transglycosylase family protein | - |
| ACFDA8_RS03765 (ACFDA8_03765) | tenA | 819096..819785 (+) | 690 | WP_002491179.1 | thiaminase II | - |
| ACFDA8_RS03770 (ACFDA8_03770) | thiD | 819778..820599 (+) | 822 | WP_002458705.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACFDA8_RS03775 (ACFDA8_03775) | thiM | 820592..821380 (+) | 789 | WP_002486939.1 | hydroxyethylthiazole kinase | - |
| ACFDA8_RS03780 (ACFDA8_03780) | thiE | 821386..822024 (+) | 639 | WP_002458704.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15144.99 Da Isoelectric Point: 5.2661
>NTDB_id=1055961 ACFDA8_RS03755 WP_002447777.1 817370..817765(+) (ssb) [Staphylococcus epidermidis strain PS25]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=1055961 ACFDA8_RS03755 WP_002447777.1 817370..817765(+) (ssb) [Staphylococcus epidermidis strain PS25]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCCAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCCAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |