Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ACFDA7_RS08655 Genome accession   NZ_CP170247
Coordinates   1839000..1839575 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Q10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834000..1844575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA7_RS08610 (ACFDA7_08605) - 1834143..1834358 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  ACFDA7_RS08615 (ACFDA7_08610) - 1834461..1834577 (+) 117 WP_350481929.1 SAR1012 family small protein -
  ACFDA7_RS08620 (ACFDA7_08615) - 1835010..1835168 (+) 159 WP_002446129.1 replication/maintenance protein RepL -
  ACFDA7_RS08625 (ACFDA7_08620) - 1835238..1835855 (-) 618 WP_002458044.1 LysE/ArgO family amino acid transporter -
  ACFDA7_RS08630 (ACFDA7_08625) - 1835859..1836806 (-) 948 WP_002458043.1 fatty acid desaturase family protein -
  ACFDA7_RS08635 (ACFDA7_08630) - 1837031..1837252 (-) 222 WP_002446125.1 hypothetical protein -
  ACFDA7_RS08640 (ACFDA7_08635) mobV 1837471..1837928 (-) 458 Protein_1668 MobV family relaxase -
  ACFDA7_RS08655 (ACFDA7_08650) comK/comK1 1839000..1839575 (-) 576 WP_001829272.1 competence protein ComK Regulator
  ACFDA7_RS08660 (ACFDA7_08655) - 1839790..1840008 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  ACFDA7_RS08665 (ACFDA7_08660) - 1840086..1841072 (-) 987 WP_002446122.1 lipoate--protein ligase -
  ACFDA7_RS08670 (ACFDA7_08665) - 1841277..1841462 (+) 186 WP_001829339.1 DUF2187 family protein -
  ACFDA7_RS08675 (ACFDA7_08670) - 1841468..1842070 (+) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  ACFDA7_RS08680 (ACFDA7_08675) - 1842173..1843678 (-) 1506 WP_002458038.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=1055946 ACFDA7_RS08655 WP_001829272.1 1839000..1839575(-) (comK/comK1) [Staphylococcus epidermidis strain Q10]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1055946 ACFDA7_RS08655 WP_001829272.1 1839000..1839575(-) (comK/comK1) [Staphylococcus epidermidis strain Q10]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743

Multiple sequence alignment