Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   ACFDA7_RS01345 Genome accession   NZ_CP170247
Coordinates   316376..317041 (+) Length   221 a.a.
NCBI ID   WP_070853629.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Q10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 311376..322041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA7_RS01330 (ACFDA7_01330) - 312733..314277 (+) 1545 WP_070853632.1 NAD(P)H-binding protein -
  ACFDA7_RS01335 (ACFDA7_01335) - 314400..315869 (-) 1470 WP_070853631.1 alkaline phosphatase -
  ACFDA7_RS01340 (ACFDA7_01340) - 316166..316345 (+) 180 WP_070853630.1 hypothetical protein -
  ACFDA7_RS01345 (ACFDA7_01345) braR 316376..317041 (+) 666 WP_070853629.1 response regulator transcription factor Regulator
  ACFDA7_RS01350 (ACFDA7_01350) braS 317047..317943 (+) 897 WP_002458293.1 HAMP domain-containing sensor histidine kinase Regulator
  ACFDA7_RS01355 (ACFDA7_01355) - 318054..318803 (+) 750 WP_381412549.1 ABC transporter ATP-binding protein -
  ACFDA7_RS01360 (ACFDA7_01360) - 318805..320817 (+) 2013 WP_002495980.1 FtsX-like permease family protein -
  ACFDA7_RS01365 (ACFDA7_01365) - 320921..321511 (+) 591 WP_020363892.1 DUF4064 domain-containing protein -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 25582.68 Da        Isoelectric Point: 5.1832

>NTDB_id=1055922 ACFDA7_RS01345 WP_070853629.1 316376..317041(+) (braR) [Staphylococcus epidermidis strain Q10]
MKIFIVEDDLVIAESLANELSKWNYEVHVVDNFEKIMEDFRRVEPQLVLLDINLPTLNGFHWCQEIRKVSHVPIMFISSR
TDNMDQILAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSIARDEIAVKGCKLIVDEAKLSKDNEHVQLSLTELQILK
LLFQNENKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDNLIETKKNVGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1055922 ACFDA7_RS01345 WP_070853629.1 316376..317041(+) (braR) [Staphylococcus epidermidis strain Q10]
ATGAAGATTTTCATTGTAGAAGACGATTTAGTGATTGCTGAAAGTTTAGCTAATGAGCTATCTAAATGGAATTATGAGGT
TCATGTGGTTGATAATTTTGAAAAGATAATGGAAGATTTTCGCAGAGTAGAACCACAACTCGTATTATTAGATATCAATC
TACCAACACTTAATGGCTTCCATTGGTGCCAAGAAATACGAAAAGTATCTCATGTGCCTATTATGTTTATTAGTTCAAGA
ACAGATAATATGGATCAAATTCTGGCTATTCAAATGGGTGGCGATGATTTTATCGAGAAACCATTTAACTTGTCTTTAAC
AGTAGCTAAAATTCAGGCACTATTGCGTCGCACTTATGATTTATCAATAGCTCGTGATGAAATAGCTGTTAAAGGTTGTA
AACTAATTGTTGATGAGGCGAAGCTTAGCAAGGATAATGAACATGTTCAACTTTCCTTAACAGAGTTACAGATATTAAAA
TTGTTATTTCAAAATGAAAATAAGTATGTAAGTCGTACAGCTTTAATTGAGAAATGTTGGGAGTCTGAGAATTTTATTGA
TGACAATACGCTAGCAGTAAATATGACGAGATTACGAAAAAAATTACTTTCTATCGGTGTCGATAATTTAATTGAGACAA
AGAAAAATGTAGGATACAAGGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.638

100

0.796


Multiple sequence alignment