Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACFDA5_RS04210 | Genome accession | NZ_CP170246 |
| Coordinates | 897495..897890 (+) | Length | 131 a.a. |
| NCBI ID | WP_002447777.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain Q8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 892495..902890
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDA5_RS04185 (ACFDA5_04185) | - | 893914..894318 (+) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
| ACFDA5_RS04190 (ACFDA5_04190) | - | 894467..894700 (+) | 234 | WP_002495678.1 | DUF1146 family protein | - |
| ACFDA5_RS04195 (ACFDA5_04195) | murA | 894810..896075 (+) | 1266 | WP_002447780.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ACFDA5_RS04200 (ACFDA5_04200) | fabZ | 896109..896546 (+) | 438 | WP_002447779.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ACFDA5_RS04205 (ACFDA5_04205) | - | 896864..897304 (-) | 441 | WP_002458706.1 | YwpF-like family protein | - |
| ACFDA5_RS04210 (ACFDA5_04210) | ssb | 897495..897890 (+) | 396 | WP_002447777.1 | single-stranded DNA-binding protein | Machinery gene |
| ACFDA5_RS04215 (ACFDA5_04215) | - | 898278..898937 (+) | 660 | WP_002447776.1 | transglycosylase family protein | - |
| ACFDA5_RS04220 (ACFDA5_04220) | tenA | 899220..899909 (+) | 690 | WP_002447775.1 | thiaminase II | - |
| ACFDA5_RS04225 (ACFDA5_04225) | thiD | 899902..900723 (+) | 822 | WP_002458705.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACFDA5_RS04230 (ACFDA5_04230) | thiM | 900716..901504 (+) | 789 | WP_002475462.1 | hydroxyethylthiazole kinase | - |
| ACFDA5_RS04235 (ACFDA5_04235) | thiE | 901510..902148 (+) | 639 | WP_002458704.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15144.99 Da Isoelectric Point: 5.2661
>NTDB_id=1055895 ACFDA5_RS04210 WP_002447777.1 897495..897890(+) (ssb) [Staphylococcus epidermidis strain Q8]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=1055895 ACFDA5_RS04210 WP_002447777.1 897495..897890(+) (ssb) [Staphylococcus epidermidis strain Q8]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |