Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACFDA9_RS03870 | Genome accession | NZ_CP170245 |
| Coordinates | 822895..823290 (+) | Length | 131 a.a. |
| NCBI ID | WP_002447777.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain Q17 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 817895..828290
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDA9_RS03845 (ACFDA9_03845) | - | 819314..819718 (+) | 405 | WP_002447782.1 | F0F1 ATP synthase subunit epsilon | - |
| ACFDA9_RS03850 (ACFDA9_03850) | - | 819867..820100 (+) | 234 | WP_002495678.1 | DUF1146 family protein | - |
| ACFDA9_RS03855 (ACFDA9_03855) | murA | 820210..821475 (+) | 1266 | WP_002447780.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ACFDA9_RS03860 (ACFDA9_03860) | fabZ | 821509..821946 (+) | 438 | WP_002447779.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ACFDA9_RS03865 (ACFDA9_03865) | - | 822264..822704 (-) | 441 | WP_002458706.1 | YwpF-like family protein | - |
| ACFDA9_RS03870 (ACFDA9_03870) | ssb | 822895..823290 (+) | 396 | WP_002447777.1 | single-stranded DNA-binding protein | Machinery gene |
| ACFDA9_RS03875 (ACFDA9_03875) | - | 823678..824337 (+) | 660 | WP_002447776.1 | transglycosylase family protein | - |
| ACFDA9_RS03880 (ACFDA9_03880) | tenA | 824621..825310 (+) | 690 | WP_002447775.1 | thiaminase II | - |
| ACFDA9_RS03885 (ACFDA9_03885) | thiD | 825303..826124 (+) | 822 | WP_002458705.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACFDA9_RS03890 (ACFDA9_03890) | thiM | 826117..826905 (+) | 789 | WP_002486939.1 | hydroxyethylthiazole kinase | - |
| ACFDA9_RS03895 (ACFDA9_03895) | thiE | 826911..827549 (+) | 639 | WP_002458704.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15144.99 Da Isoelectric Point: 5.2661
>NTDB_id=1055861 ACFDA9_RS03870 WP_002447777.1 822895..823290(+) (ssb) [Staphylococcus epidermidis strain Q17]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=1055861 ACFDA9_RS03870 WP_002447777.1 822895..823290(+) (ssb) [Staphylococcus epidermidis strain Q17]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |