Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8622_RS07210 Genome accession   NZ_AP028408
Coordinates   1411173..1412354 (-) Length   393 a.a.
NCBI ID   WP_002868229.1    Uniprot ID   A0AB36G5F3
Organism   Campylobacter jejuni strain IDH-11860     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1406173..1417354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8622_RS07180 (I11860_14130) - 1406717..1407058 (+) 342 WP_002784057.1 hypothetical protein -
  R8622_RS07185 (I11860_14140) flgM 1407121..1407318 (+) 198 WP_002872343.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8622_RS07190 (I11860_14150) - 1407361..1407795 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8622_RS07195 (I11860_14160) flgK 1407805..1409631 (+) 1827 WP_002871863.1 flagellar hook-associated protein FlgK -
  R8622_RS07200 (I11860_14170) - 1409648..1410412 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8622_RS07205 (I11860_14180) - 1410416..1411180 (+) 765 WP_002871861.1 TSUP family transporter -
  R8622_RS07210 (I11860_14190) ctsF 1411173..1412354 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  R8622_RS07215 (I11860_14200) ctsE 1412351..1413910 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  R8622_RS07220 (I11860_14210) ctsX 1413900..1414487 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8622_RS07225 (I11860_14220) ctsP 1414491..1415099 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8622_RS07230 mshL 1415092..1416505 (-) 1414 Protein_1402 pilus (MSHA type) biogenesis protein MshL -
  R8622_RS07235 (I11860_14250) ctsR 1416483..1416794 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45730.33 Da        Isoelectric Point: 9.0938

>NTDB_id=105581 R8622_RS07210 WP_002868229.1 1411173..1412354(-) (ctsF) [Campylobacter jejuni strain IDH-11860]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105581 R8622_RS07210 WP_002868229.1 1411173..1412354(-) (ctsF) [Campylobacter jejuni strain IDH-11860]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTGTCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAGATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGTTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment