Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8622_RS07235 Genome accession   NZ_AP028408
Coordinates   1416483..1416794 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain IDH-11860     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1411483..1421794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8622_RS07215 (I11860_14200) ctsE 1412351..1413910 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  R8622_RS07220 (I11860_14210) ctsX 1413900..1414487 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8622_RS07225 (I11860_14220) ctsP 1414491..1415099 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8622_RS07230 mshL 1415092..1416505 (-) 1414 Protein_1402 pilus (MSHA type) biogenesis protein MshL -
  R8622_RS07235 (I11860_14250) ctsR 1416483..1416794 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8622_RS07240 (I11860_14260) nifJ 1416818..1420378 (-) 3561 WP_002871858.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8622_RS07245 (I11860_14270) - 1420471..1421112 (-) 642 WP_002871857.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=105585 R8622_RS07235 WP_002855438.1 1416483..1416794(-) (ctsR) [Campylobacter jejuni strain IDH-11860]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105585 R8622_RS07235 WP_002855438.1 1416483..1416794(-) (ctsR) [Campylobacter jejuni strain IDH-11860]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment